Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MRSYLILRLAGPMQAWGQPTFEGTRPTGRFPTRSGLLGLLGACLGIQRDDTSSLQALSESVQFAVRCDELILDDRRVSVT
GLRDYHTVLGAREDYRGLKSHETIQTWREYLCDASFTVALWLTPHATMVISELEKAVLKPRYTPYLGRRSCPLTHPLFLG
TCQASDPQKALLNYEPVGGDIYSEESVTGHHLKFTARDEPMITLPRQFASREWYVIKG

The query sequence (length=218) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5cd4:H 219 218 1.0000 0.9954 1.0000 1.43e-163 5cd4:T, 5h9e:J, 5h9f:J, 4tvx:H, 4tvx:T, 4u7u:K, 4u7u:W
2 4qyz:J 195 218 0.8899 0.9949 0.8899 8.66e-132
3 6c66:M 244 188 0.3165 0.2828 0.3670 1.16e-20 5u07:N, 5u0a:N
4 8yb6:A 350 158 0.2844 0.1771 0.3924 4.81e-18 8yha:A
5 8opo:A 1195 53 0.0734 0.0134 0.3019 2.7 5kwb:A, 8opm:A, 8opm:B, 8opm:C, 8opn:A, 8opn:B, 8opn:C, 8opo:B, 8opo:C, 8y7y:A
6 2vf7:B 813 132 0.1422 0.0381 0.2348 2.7 2vf8:A
7 2vf8:B 835 132 0.1422 0.0371 0.2348 2.7 2vf7:A, 2vf7:C
8 7kd2:C 115 81 0.1101 0.2087 0.2963 2.8
9 8a3l:y 58 45 0.0688 0.2586 0.3333 3.2 7abz:Z, 7ac7:Z, 7acj:Z, 7acr:Z, 5ady:Z, 5afi:Z, 5aka:Y, 8akn:y, 8am9:y, 8ana:y, 8ap4:y, 9ax7:y, 9ax8:3, 8aye:y, 8b0x:y, 7b5k:Z, 8b7y:h, 3bbx:Y, 8bf7:W, 8bge:W, 8bgh:W, 8bh4:W, 8bhj:W, 8bhl:W, 8bhn:W, 8bhp:W, 8bil:W, 8bim:W, 7bl2:Z, 7bl3:Z, 7bl4:Z, 7bl5:Z, 7bl6:Z, 6bu8:28, 7bv8:a, 6by1:CZ, 6by1:DZ, 6c4i:0, 8c8x:Z, 8c8y:Z, 8c8z:Z, 8c90:Z, 8c91:Z, 8c92:Z, 8c93:Z, 8c94:Z, 8c95:Z, 8c96:Z, 8c98:Z, 8c99:Z, 8cam:y, 8ceu:y, 8cgd:y, 8cgk:y, 8cgv:y, 9cg5:y, 9cg6:y, 9cg7:y, 7cpj:Z, 4csu:2, 7d6z:T, 7d80:x, 6dnc:DA, 8eiu:y, 8ekc:2, 8emm:y, 6enf:Z, 6enj:Z, 6enu:Z, 9fbv:y, 8fiz:BQ, 8fto:y, 8fzd:2, 8fze:2, 8fzf:2, 8fzg:2, 8fzh:2, 8fzi:2, 8fzj:2, 8g2u:Z, 8g31:Z, 8g34:Z, 8g38:Z, 8g6w:y, 8g6x:y, 8g6y:y, 8g7p:2, 8g7q:2, 8g7r:2, 8g7s:2, 5gad:a, 5gae:a, 5gaf:a, 5gag:a, 5gah:a, 6gbz:Z, 6gc0:Z, 6gc4:Z, 6gc6:Z, 6gc7:Z, 6gc8:Z, 6gwt:Z, 6gxm:Z, 6gxn:Z, 6gxo:Z, 6gxp:Z, 6h4n:Z, 5h5u:a, 6h58:Z, 6h58:ZZ, 6hrm:Z, 8hsp:y, 8htz:y, 8hu1:y, 6i0y:Z, 6i7v:D0, 6i7v:C0, 8ifb:y, 8ifc:y, 5iqr:Z, 5it8:C0, 5it8:D0, 8j1z:y, 2j28:Y, 3j5l:Z, 5j5b:C0, 5j5b:D0, 3j7z:Z, 5j7l:C0, 5j7l:D0, 3j8g:2, 5j88:C0, 5j88:D0, 5j8a:C0, 5j8a:D0, 3j9y:Z, 3j9z:LY, 5j91:C0, 5j91:D0, 3ja1:L1, 3jbu:2, 3jbv:2, 3jcd:Z, 3jce:Z, 3jcj:Y, 3jcn:Z, 5jc9:C0, 5jc9:D0, 7jss:z, 7jsw:z, 7jsz:z, 5jte:BZ, 7jt1:z, 7jt2:z, 7jt3:z, 5ju8:BZ, 7k00:y, 7k50:z, 7k51:z, 7k52:z, 7k53:z, 7k54:z, 7k55:z, 5kcr:13, 5kcs:13, 5kps:Z, 5kpv:Y, 5kpw:Y, 5kpx:Y, 5l3p:3, 6lkq:h, 7lv0:z, 7lvk:h, 5lza:Z, 5lzb:Z, 5lzc:Z, 5lzd:Z, 5lze:Z, 5lzf:Z, 7m5d:Z, 5mdv:Z, 5mdw:Z, 5mdy:Z, 5mdz:Z, 5mgp:Z, 7n1p:Ld, 7n2c:Ld, 7n2u:Ld, 7n2v:Ld, 7n30:Ld, 7n31:Ld, 7nbu:y, 5nco:a, 5np6:x, 7nso:Z, 7nsp:Z, 7nsq:Z, 5nwy:m, 7nwt:Z, 7nww:Y, 7o19:BZ, 7o1a:BZ, 7o1c:BZ, 5o2r:Z, 6o9j:Y, 6o9k:3, 6ofx:z, 6og7:z, 6ogf:z, 6ogg:z, 6ogi:z, 7oif:Y, 7oig:Y, 7oii:Y, 7oiz:y, 7oj0:y, 6om6:Z, 6ore:Z, 6orl:Z, 6osk:Z, 6osq:Z, 6ost:Z, 6ot3:Z, 7ot5:Y, 7otc:Z, 6ouo:Z, 8p16:Z, 8p17:Z, 8p18:Z, 7p3k:y, 8peg:3, 8phj:y, 6pj6:h, 7pjs:Z, 7pjt:Z, 7pju:Z, 7pjv:Z, 7pjw:Z, 7pjx:Z, 7pjy:Z, 7pjz:Z, 8pkl:3, 8pva:y, 7q4k:BZ, 8q4f:y, 6q97:Z, 6q98:Z, 6q9a:Z, 8qbt:Z, 6qdw:2, 7qg8:m, 7qgh:m, 7qgn:m, 7qgr:m, 8qk7:Z, 8qoa:y, 7qq3:h, 6qul:a, 8r3v:32, 8r6c:y, 8r8m:y, 8rcl:32, 8rcm:32, 8rcs:32, 8rct:32, 8rpy:Z, 8rpz:Z, 8rq0:Z, 8rq2:Z, 6s0k:a, 7s1g:h, 7s1h:h, 7s1i:h, 7s1j:h, 7s1k:h, 7sa4:Z, 7ss9:z, 7ssd:z, 7ssl:z, 7ssn:z, 7sso:z, 7ssw:z, 7st2:z, 7st6:z, 7st7:z, 8syl:2, 6szs:Z, 8t5d:Z, 8t5h:Z, 6tbv:L301, 6tc3:L301, 7tos:L30, 4u1u:BZ, 4u1u:DZ, 4u1v:BZ, 4u1v:DZ, 4u20:BZ, 4u20:DZ, 4u24:BZ, 4u24:DZ, 4u25:BZ, 4u25:DZ, 4u26:BZ, 4u26:DZ, 4u27:BZ, 4u27:DZ, 5u4i:0, 6u48:C0, 5u9f:28, 5u9g:28, 7ug7:Ld, 7uph:y, 8upo:f, 8upr:f, 8uql:f, 8uqm:f, 8uqp:f, 8ur0:f, 8urh:f, 8uri:f, 8urx:f, 8ury:f, 4uy8:Z, 5uyk:28, 5uyl:28, 5uym:28, 5uyn:28, 5uyp:28, 5uyq:28, 4v4h:BY, 4v4h:DY, 4v4q:BY, 4v4q:DY, 4v4v:BX, 4v4w:BX, 4v50:BZ, 4v50:DZ, 4v52:BY, 4v52:DY, 4v53:BY, 4v53:DY, 4v54:BY, 4v54:DY, 4v55:BY, 4v55:DY, 4v56:BY, 4v56:DY, 4v57:BY, 4v57:DY, 4v5b:AY, 4v5b:CY, 4v5h:B2, 4v5y:BY, 4v5y:DY, 4v64:BY, 4v64:DY, 4v65:BR, 4v66:BR, 4v69:BZ, 4v6c:BZ, 4v6c:DZ, 4v6d:BZ, 4v6d:DZ, 4v6e:BZ, 4v6e:DZ, 4v6k:Aa, 4v6l:Ba, 4v6m:BZ, 4v6n:A1, 4v6o:B1, 4v6p:B1, 4v6q:B1, 4v6r:B1, 4v6s:A1, 4v6t:BZ, 4v6v:B3, 4v6y:BZ, 4v6z:BZ, 4v70:BZ, 4v71:BZ, 4v72:BZ, 4v73:BZ, 4v74:BZ, 4v75:BZ, 4v76:BZ, 4v77:BZ, 4v78:BZ, 4v79:BZ, 4v7a:BZ, 4v7b:BZ, 4v7c:B2, 4v7d:A3, 4v7i:AZ, 4v7s:BZ, 4v7s:DZ, 4v7t:BZ, 4v7t:DZ, 4v7u:BZ, 4v7u:DZ, 4v7v:BZ, 4v7v:DZ, 4v85:B3, 4v89:B3, 4v9c:BZ, 4v9c:DZ, 4v9d:CZ, 4v9d:DZ, 4v9o:AZ, 4v9o:CZ, 4v9o:EZ, 4v9o:GZ, 4v9p:AZ, 4v9p:CZ, 4v9p:EZ, 4v9p:GZ, 8vs9:L30, 8vsa:L30, 6vu3:f, 6vwl:X, 6vwm:X, 6vwn:X, 6vyq:f, 6vyr:f, 6vys:f, 6vyt:f, 6vyu:f, 6vyw:f, 6vyx:f, 6vyy:f, 6vyz:f, 6vz2:f, 6vz3:f, 6vz5:f, 6vz7:f, 6vzj:f, 8w51:0, 5wdt:Z, 6wd0:z, 6wd1:z, 6wd2:z, 6wd3:z, 6wd4:z, 6wd5:z, 6wd6:z, 6wd7:z, 6wd8:z, 6wd9:z, 6wda:z, 6wdb:z, 6wdc:z, 6wdd:z, 6wde:z, 6wdf:z, 6wdg:z, 6wdh:z, 6wdi:z, 6wdj:z, 6wdk:z, 6wdl:z, 6wdm:z, 5we4:Z, 5we6:Z, 4wf1:BZ, 4wf1:DZ, 5wf0:Z, 5wfk:Z, 5wfs:Z, 6wnt:z, 6wnv:z, 6wnw:z, 4woi:BZ, 4woi:CZ, 4www:RZ, 4www:YZ, 6x6t:f, 6x7f:f, 6x7k:f, 6x9q:f, 6xdq:f, 6xdr:f, 6xgf:f, 6xii:f, 6xij:f, 6xz7:Z, 6xza:Z2, 6xzb:Z2, 6y69:Z, 7y7c:y, 7y7d:y, 7y7e:y, 7y7f:y, 7y7g:y, 7y7h:y, 4ybb:C0, 4ybb:D0, 7yla:h, 6ys3:2, 6ysr:Z, 6yss:Z, 6yst:Z, 6ysu:Z, 7z20:2, 7zod:2, 7zp8:2, 7zq5:2, 7zq6:2, 6ztj:B1, 6ztl:B1, 6ztm:B1, 6ztn:B1, 6zto:B1, 6ztp:B1, 7zta:L301, 6zu1:B1

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218