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BioLiP
>protein
MRRIFWNFKTAFVGLPMFSLAPKNILVYPIVVGVPLYTFIVLQNSVRGFAYFDEYDSDVKE

The query sequence (length=61) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8bqs:CN 62 61 1.0000 0.9839 1.0000 2.56e-40 8gym:2n, 8gym:2N
2 6rj9:C 836 25 0.2131 0.0156 0.5200 1.0 6rjd:C
3 4yd9:L 366 20 0.1475 0.0246 0.4500 1.5 4yd9:C, 4yd9:a, 4yd9:F, 4yd9:R, 4yd9:I, 4yd9:O, 4yd9:U, 4yd9:X, 4yd9:d
4 8ulg:A 827 37 0.2295 0.0169 0.3784 3.0 7jsn:A, 6mzb:A, 8ufi:A, 8ugb:A, 8ugs:A
5 4gu7:A 310 14 0.1475 0.0290 0.6429 4.1 4gu7:B, 4gu7:C, 4gu7:D, 8pws:A, 8pws:B, 8pws:C, 8pws:D, 8pws:E, 8pws:F, 8pwy:A, 8pwy:B, 8pwy:C, 8pwy:D, 8pwy:E, 8pwy:F, 7qze:A, 7qze:B, 7qze:C, 7qze:D, 7qze:E, 7qze:F, 7qzf:A, 7qzf:B, 7qzf:C, 7qzf:D, 7qzf:E, 7qzf:F, 7qzg:A, 7qzg:B, 7qzg:C, 7qzg:D, 7qzg:E, 7qzg:F, 7qzh:A, 7qzh:B, 7qzh:C, 7qzh:D, 7qzh:E, 7qzh:F, 8rwy:A, 8rwy:B, 8rwy:C, 8rwy:D, 8rwy:E, 8rwy:F, 6yr4:A, 6yr4:B, 6yr4:C, 6yr4:D, 6yr4:E, 6yr4:F, 6yrc:A, 6yrc:B, 6yrc:C, 6yrc:D, 6yrc:E, 6yrc:F, 6yrd:A, 6yrd:B, 6yrd:C, 6yrd:D, 6yrd:E, 6yrd:F, 6yrj:A, 6yrj:B, 6yrj:C, 6yrj:D, 6yrj:E, 6yrj:F, 7zmj:A, 7zmj:B, 7zmj:C, 7zmj:D, 7zmj:E, 7zmj:F
6 2glf:A 450 41 0.2131 0.0289 0.3171 5.8 2glf:B, 2glf:C, 2glf:D
7 3axb:A 428 29 0.1803 0.0257 0.3793 6.7 3vqr:A, 3vqr:B
8 3f11:A 316 48 0.2295 0.0443 0.2917 6.7 2pt2:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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