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BioLiP
>protein
MRRIAVVGAAGRMGKNLIEAVQQTGGAAGLTAAVDRPDSTLVGADAGELAGLGRIGVPLSGDLGKVCEEFDVLIDFTHPS
VTLKNIEQCRKARRAMVIGTTGFSADEKLLLAEAAKDIPIVFAANFSVGVNLCLKLLDTAARVLGDEVDIEIIEAHHRHK
VDAPSGTALRMGEVVAQALGRDLQEVAVYGREGQTGARARETIGFATVRAGDVVGDHTVLFAAEGERVEITHKASSRMTF
ARGAVRAALWLEGKENGLYDMQDVLGLR

The query sequence (length=268) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4ywj:A 268 268 1.0000 1.0000 1.0000 0.0 4ywj:B
2 1dih:A 272 266 0.6231 0.6140 0.6278 8.15e-108 1arz:A, 1arz:B, 1arz:C, 1arz:D, 1dru:A, 1drv:A, 1drw:A
3 5tej:A 269 268 0.5709 0.5688 0.5709 1.42e-107 5tej:B, 5tej:C, 5tej:D, 5tem:C, 5tem:A, 5ten:A, 5ten:B, 5ten:C, 5ten:D, 5ten:E, 5ten:F, 5ten:G, 5ten:H, 5us6:A, 5us6:B, 5us6:C, 5us6:E, 5us6:F, 5us6:G, 5us6:I, 5us6:J, 5us6:K
4 3ijp:B 267 266 0.4366 0.4382 0.4398 1.77e-68 3ijp:A
5 1vm6:B 218 263 0.3209 0.3945 0.3270 6.32e-42 1vm6:A, 1vm6:C, 1vm6:D
6 1yl5:A 247 275 0.3396 0.3684 0.3309 4.81e-25 1c3v:A, 1c3v:B, 1p9l:A, 1p9l:B, 5tjy:A, 5tjz:A, 5ugv:A, 5ugv:B, 1yl5:B, 1yl6:A, 1yl6:B, 1yl7:A, 1yl7:B, 1yl7:C, 1yl7:D, 1yl7:E, 1yl7:F, 1yl7:G, 1yl7:H
7 5z2e:A 265 273 0.2910 0.2943 0.2857 8.99e-25 5z2f:A
8 5wol:A 230 226 0.2351 0.2739 0.2788 1.70e-19
9 5eer:A 247 252 0.2724 0.2955 0.2897 1.86e-19 5ees:A
10 5u5n:A 279 208 0.2090 0.2007 0.2692 1.01e-04 5u5i:A, 5u5i:B, 5u5n:B
11 7cgv:A 310 38 0.0522 0.0452 0.3684 0.68 7cgv:B, 7cgv:C, 7cgv:D
12 6iaq:D 339 43 0.0672 0.0531 0.4186 2.6 6iaq:A, 6iaq:B, 6iaq:C
13 6dcd:A 406 128 0.1418 0.0936 0.2969 3.3
14 1ppx:A 129 32 0.0522 0.1085 0.4375 4.2 3a6t:A, 3a6u:A, 3a6v:A, 3a6v:B, 1pun:A, 1puq:A, 1pus:A, 1tum:A, 7ww5:A, 7ww6:A, 7ww7:A, 7ww8:A, 7ww9:A, 7wwa:A, 7x9h:A, 7x9i:A, 7x9j:A, 7x9k:A, 7x9l:A, 7x9n:A, 7x9o:A
15 6dfe:B 325 30 0.0522 0.0431 0.4667 4.8 6dfe:A, 2h1f:A, 2h1f:B, 2h1h:A, 2h1h:B
16 4bts:AP 148 47 0.0597 0.1081 0.3404 5.9 4bts:BP, 4bts:CP, 4bts:DP, 5jpq:0, 4v5o:AP, 4v5o:BP

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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