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BioLiP
>protein
MRQLAKDINAFLNEVILQAENQHEILIGHCTSEVALTNTQEHILMLLSEESLTNSELARRLNVSQAAVTKAIKSLVKEGM
LETSKDSKDARVIFYQLTDLARPIAEEHHHHHEHTLLTYEQVATQFTPNEQKVIQRFLTALVGEIK

The query sequence (length=146) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3tgn:B 146 146 1.0000 1.0000 1.0000 4.49e-105 3tgn:A
2 5jlu:A 137 142 0.4932 0.5255 0.5070 5.42e-46 5jls:A
3 5yhx:N 146 143 0.4795 0.4795 0.4895 2.20e-45 5yhx:A, 5yhx:B, 5yhx:G, 5yhx:H, 5yhx:M, 5yhx:S, 5yhx:T, 5yhy:A, 5yhz:A, 5yi0:B, 5yi0:A, 5yi0:C, 5yi0:D, 5yi2:A, 5yi2:B, 5yi2:E, 5yi2:F, 5yi2:I, 5yi2:J, 5yi2:M, 5yi2:N, 5yi3:A, 5yi3:B, 5yi3:E, 5yi3:F, 5yi3:I, 5yi3:J, 5yi3:M, 5yi3:N
4 6fi9:A 144 143 0.4658 0.4722 0.4755 1.55e-42 6fi9:B, 6fi9:C, 6fi9:D, 6fi9:E, 6fi9:F, 6fi9:G, 6fi9:H
5 7fby:A 153 50 0.1301 0.1242 0.3800 0.003
6 4xrf:A 142 74 0.1507 0.1549 0.2973 0.004
7 4kdp:A 151 107 0.1781 0.1722 0.2430 0.004 4ejv:A, 4ejv:B, 4ejw:A, 4ejw:B, 4kdp:B, 4kdp:C, 4kdp:D, 3kp2:A, 3kp2:B, 3kp3:B, 3kp4:A, 3kp4:B, 3kp5:A, 3kp5:B
8 6o8m:A 95 57 0.1233 0.1895 0.3158 0.018
9 3hru:A 211 66 0.1575 0.1090 0.3485 0.032 3hru:B
10 7amv:W 637 82 0.1575 0.0361 0.2805 0.038
11 4ihs:B 93 88 0.1438 0.2258 0.2386 0.84 4ihs:A, 4ihs:C, 4ihs:D, 4iht:A, 4iht:B, 4iht:C, 4iht:D
12 7c0i:B 67 37 0.0822 0.1791 0.3243 0.90 7c0i:A, 7c0i:C
13 5d4s:B 83 29 0.0822 0.1446 0.4138 1.6 5d4r:A, 5d4r:B, 5d4s:A, 4egy:A, 4egy:B, 4egz:A, 4egz:B, 4h0e:A, 4h0e:B
14 2vn2:A 110 29 0.0753 0.1000 0.3793 1.9 2vn2:B, 2vn2:C, 2vn2:D
15 4qdg:B 302 93 0.1507 0.0728 0.2366 3.2 4qdg:A
16 7shl:A 645 62 0.1233 0.0279 0.2903 3.9
17 6iey:A 307 58 0.1301 0.0619 0.3276 4.3
18 4mdv:A 351 82 0.1575 0.0655 0.2805 4.4 4mdv:B
19 5e1z:B 169 60 0.1233 0.1065 0.3000 5.4 5e1x:A, 5e20:A
20 7kua:A 149 70 0.0959 0.0940 0.2000 5.8
21 6vvh:BBB 313 41 0.0959 0.0447 0.3415 8.1 4dpq:A, 4dpq:B, 7mds:A, 7mds:B, 6vvh:AAA, 6vvh:CCC, 6vvh:DDD
22 3q5f:A 141 52 0.0822 0.0851 0.2308 8.6 3q5f:B
23 3luz:B 234 61 0.1370 0.0855 0.3279 9.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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