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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MRPVLVLLHRYVGLATALFLFLAGLTGSLLAFHHEIDEWLNPGFYAVGEGGERLSPGSLVQRVESRYPRQLVWYMEYPEA
GGHPALLATVPREAGAKVEHDVFYLDPVSGEEVGKRLWAACCFQPANLVPWVLEFHHNLTLPGNWGLYLMGGVAMFWFLD
CFVGAWLTLPRNAYRFNFDLHRAGGLWLWLLLAPVALSSVALNLPSQVFKPLVSLFSPIEPSVYEARGRLPREQLGETRL
DYDRTFQLASVEAARLGIAEPIGELYYSFEYNFFGAGFGDHDDPMGKSWLFFHGSDGRLLGQEVAGQGSWGERFYRLQYP
IHGGRIAGLPGRIAIAALGLAIAGLSLTGVYIWWRKRRARHWNGR

The query sequence (length=365) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7abw:B 365 365 1.0000 1.0000 1.0000 0.0 7abw:A
2 2bgg:B 394 110 0.0685 0.0635 0.2273 1.1 2w42:B
3 8ok9:A 430 110 0.0685 0.0581 0.2273 1.1 2bgg:A, 8pvv:A, 8qg0:A, 6t5t:A, 6tuo:A, 2w42:A, 6xu0:A, 6xu0:B, 6xup:A, 6xup:B, 1ytu:A, 1ytu:B
4 5h6j:B 222 45 0.0466 0.0766 0.3778 1.5 5h6j:A, 5h6l:A, 5h6l:B
5 1uky:A 196 70 0.0685 0.1276 0.3571 4.9 1ukz:A
6 4aq0:A 765 120 0.0904 0.0431 0.2750 7.3 4aq0:B, 2xsg:A, 2xsg:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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