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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MRNEMHLQFSARSENESFARVTVAAFVAQLDPTMDELTEIKTVVSEAVTNAIIHGYNNDPNGIVSISVIIEDGVVHLTVR
DEGVGIPDIEEARQPLERSGMGFTIMENFMDEVIVESEVNKGTTVYLKKHGI

The query sequence (length=132) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1l0o:A 141 137 0.9848 0.9220 0.9489 2.83e-90 1l0o:B, 1th8:A, 1thn:A, 1thn:C, 1tid:A, 1tid:C, 1til:A, 1til:C, 1til:E
2 4r3a:A 318 86 0.2045 0.0849 0.3140 1.26e-04 4r38:A, 4r38:B, 4r38:C, 4r38:D, 4r39:A, 4r39:B, 4r39:C, 4r39:D
3 4jav:A 246 117 0.2348 0.1260 0.2650 2.14e-04 6azr:A, 6azr:C, 2c2a:A, 3dge:A, 3dge:B, 4jas:A, 4jau:A, 4jav:B, 6rfv:A, 6rfv:B, 6rgy:A, 6rgy:B, 6rgz:A, 6rgz:B, 6rh0:A, 6rh0:B, 6rh1:A, 6rh1:B, 6rh2:A, 6rh2:B, 6rh7:A, 6rh7:B, 6rh8:A, 6rh8:B, 5uht:A, 5uht:C
4 3sl2:A 145 115 0.2500 0.2276 0.2870 0.003
5 3ke6:A 354 80 0.1742 0.0650 0.2875 0.004 3ke6:B
6 4r3a:B 278 88 0.2121 0.1007 0.3182 0.012
7 3d36:B 221 93 0.1970 0.1176 0.2796 0.019 3d36:A
8 8sbm:B 126 73 0.1667 0.1746 0.3014 0.069 8sbm:A, 3zxo:A, 3zxo:B
9 2qyv:A 472 65 0.1667 0.0466 0.3385 0.36 2qyv:B
10 2ml2:A 161 45 0.1061 0.0870 0.3111 2.1
11 6ikg:A 644 70 0.1288 0.0264 0.2429 4.0 6ikg:B
12 7wae:B 877 32 0.0985 0.0148 0.4062 5.1 7wad:A, 7wad:B, 7wad:C, 7wad:D, 7wae:D, 7wae:A, 7wae:C, 7waf:A, 7waf:C, 7waf:D, 7waf:B
13 4k0b:A 404 48 0.1136 0.0371 0.3125 9.5 4k0b:B, 4l2z:A, 4l2z:B, 4l7i:A, 4l7i:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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