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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MRLEQLQAFLAIAETGSFQKAASKCGVTQSTISRQIQSLEADLGLELFHRTNHSKLTLGGERLLPRARKICLEWETATQE
LGDLIAGKQPELCIAAIHSLCGSYLPPVLQKFCRDYPEVQLRVTSLGSDRALKVLKDGLVDLAIVMNNRFLTTGRDMVVE
VLYDEPIELLTAANHPLAAYERVPWSELVRYPQVVFKDGYGMQRLVQEKFERLEATLQAALEVNTLDAFRGVVRQGELIA
LLPSSALVEARLDPTLAVRPLALTRRVVMVTTQDRLQIPPIKHFWQLVRENIPP

The query sequence (length=294) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8h3v:S 304 303 1.0000 0.9671 0.9703 0.0 8h3v:T, 8h3v:U, 8h3v:V
2 5y2v:A 304 247 0.2245 0.2171 0.2672 5.12e-20 5y2v:B, 5y2v:C, 5y2v:D, 5y2w:A
3 9f14:A 324 259 0.2143 0.1944 0.2432 3.98e-16 9f14:B, 9fdd:A, 9fdd:B, 9fdd:C, 9fdd:D, 9fdd:E, 9fdd:F, 9fdd:G, 9fdd:H, 4lq2:A, 4lq5:A, 4m4g:A
4 6g4r:B 322 256 0.2245 0.2050 0.2578 1.10e-14 6g1b:J, 6g4r:E
5 3fxr:A 296 254 0.2211 0.2196 0.2559 1.82e-12 3fxu:A, 3fxu:B, 3n6u:A
6 5z49:B 220 153 0.1156 0.1545 0.2222 5.33e-09 5z49:A
7 7d98:Q 288 153 0.1667 0.1701 0.3203 2.08e-08 7d98:A, 7d98:B, 7d98:P, 5xxp:A, 5xxp:B
8 6xtv:B 290 110 0.1224 0.1241 0.3273 4.99e-08
9 4ihs:B 93 50 0.0816 0.2581 0.4800 1.09e-07 4ihs:A, 4ihs:C, 4ihs:D, 4iht:A, 4iht:B, 4iht:C, 4iht:D
10 8y6u:H 92 80 0.1122 0.3587 0.4125 4.78e-07 8y6u:J
11 3hfu:B 204 194 0.1361 0.1961 0.2062 5.38e-07 3hfu:A, 3hfu:C, 3hfu:D
12 7w06:A 207 88 0.0918 0.1304 0.3068 2.43e-05 7w07:A
13 3glb:D 219 158 0.1224 0.1644 0.2278 8.89e-05 2f7c:A, 3glb:A, 3glb:B, 3glb:C
14 5ted:B 210 190 0.1224 0.1714 0.1895 1.21e-04 5ted:A
15 7xro:B 207 86 0.0782 0.1111 0.2674 0.008
16 5vvi:A 208 52 0.0578 0.0817 0.3269 0.038 5vvi:B, 5vvi:C
17 1twy:A 249 43 0.0510 0.0602 0.3488 0.064
18 7erp:B 199 152 0.1020 0.1508 0.1974 0.072 7erp:A, 7erp:C, 7erp:D
19 7dmw:A 200 157 0.1190 0.1750 0.2229 0.11 7dmw:B, 7dmw:C, 7dmw:D, 7dmw:E
20 9bh5:CI 213 45 0.0476 0.0657 0.3111 1.1 9cai:CI
21 8ftm:B 731 38 0.0544 0.0219 0.4211 2.4 8ftm:A
22 8fth:A 1263 38 0.0544 0.0127 0.4211 2.7
23 4q8r:A 241 88 0.0816 0.0996 0.2727 2.7
24 7t30:A 666 74 0.0544 0.0240 0.2162 4.1 7t2r:A, 7t2r:F, 7t30:F
25 7ak5:O 320 105 0.0918 0.0844 0.2571 5.1 7ak6:O, 7b93:O, 8c2s:O, 8ca3:O, 8ca5:O, 6g2j:O, 6g72:O, 8iao:O, 8iaq:O, 8ib4:O, 8ib6:O, 8ib9:O, 8ibb:O, 8ibd:O, 8ibf:O, 8ic2:O, 8ic4:O, 8olt:O, 8om1:O, 7psa:O, 8pw5:O1, 8pw6:O1, 8pw7:O1, 8rgp:O, 8rgq:O, 8rgr:O, 8rgt:O, 6zr2:O, 6ztq:O
26 8p5d:LI0 217 45 0.0442 0.0599 0.2889 5.2 8p60:LI0, 8p60:KI0, 7qca:LI0
27 2f7a:B 213 172 0.1122 0.1549 0.1919 5.2
28 3ssn:B 350 136 0.1054 0.0886 0.2279 6.4
29 5jj5:A 308 47 0.0510 0.0487 0.3191 7.2 4hmq:A, 4hmq:B, 5jj5:B
30 1s20:G 335 68 0.0714 0.0627 0.3088 8.8 1s20:A, 1s20:B, 1s20:C, 1s20:D, 1s20:E, 1s20:F, 1s20:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218