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BioLiP
>protein
MRLDKFLKVSRLIKRRTLAKEVADQGRISINGNQAKASSDVKPGDELTVRFGQKLVTVQVNELKDTTKKEEAANMYTILK
EEK

The query sequence (length=83) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7aqc:Y 84 83 1.0000 0.9881 1.0000 6.92e-56 7as8:1, 7asa:1, 7ope:1
2 8ap4:A 102 77 0.3373 0.2745 0.3636 5.62e-08
3 3dh3:B 241 93 0.3253 0.1120 0.2903 0.001 3dh3:A, 3dh3:C, 3dh3:D
4 3iyd:C 1089 39 0.1325 0.0101 0.2821 1.3
5 6vyx:AA 1223 39 0.1325 0.0090 0.2821 1.3 6vyy:AA, 6vyz:AA, 6vz3:AA
6 8txo:I 1024 39 0.1325 0.0107 0.2821 1.3
7 8sy7:I 1170 39 0.1325 0.0094 0.2821 1.3 8igr:I, 8sy5:I, 8sy6:I
8 7ypb:C 1292 39 0.1325 0.0085 0.2821 1.4 7ypa:C
9 4s20:C 1179 39 0.1325 0.0093 0.2821 1.4 4s20:H
10 8pil:I 1342 39 0.1325 0.0082 0.2821 1.4 8ac0:C, 7adb:X, 7adc:X, 7add:X, 7ade:X, 6b6h:C, 7bef:C, 7beg:C, 6byu:C, 7c17:C, 6c6s:I, 7c97:C, 6ca0:C, 7chw:C, 6cux:C, 7d7d:C, 7dy6:C, 8e3f:A, 8e5k:A, 8e5o:A, 8e6x:A, 8e6z:A, 8eg8:I, 8egb:I, 6flq:C, 8ftd:I, 6gfw:C, 6gh5:C, 6gov:X, 5ipl:C, 5ipm:C, 5ipn:C, 6jnx:C, 8jo2:C, 6k4y:C, 8k58:C, 8k5a:C, 7khb:C, 7khc:C, 7khe:C, 7khi:C, 6kj6:C, 4kmu:C, 4kmu:H, 4kn4:C, 4kn4:H, 4kn7:C, 4kn7:H, 6ldi:C, 7m8e:C, 4mex:C, 4mex:I, 7mkd:I, 7mke:I, 7mki:I, 7mkj:I, 7mkn:C, 6n4c:C, 7n4e:C, 6n57:I, 6n58:I, 6n60:C, 6omf:C, 6oul:I, 6p18:C, 6p19:C, 6pb4:C, 6pb5:C, 6pb6:C, 8pdy:I, 8ph9:I, 6pmi:C, 6pmj:C, 6psq:I, 6psr:I, 6pst:I, 6psu:I, 6psv:I, 6psw:I, 7py0:C, 7py1:C, 7py3:C, 7py5:C, 7py6:C, 7py7:C, 7py8:C, 7pyj:C, 7pyk:C, 7q0j:C, 7q0k:C, 8re4:C, 8rea:C, 8reb:C, 8rec:C, 8red:C, 8ree:C, 7szj:C, 7szk:C, 8to1:I, 8to6:I, 8to8:I, 8toe:I, 8tom:I, 6tqn:X, 6tqo:X, 8u3b:C, 5uac:C, 5uah:C, 5ual:C, 7ubm:C, 7ubn:C, 6utv:CCC, 6utw:CCC, 6utx:CCC, 6uty:CCC, 6utz:CCC, 6uu0:CCC, 6uu1:CCC, 6uu2:CCC, 6uu3:CCC, 6uu4:CCC, 6uu5:CCC, 6uu6:CCC, 6uu7:CCC, 6uu8:CCC, 6uu9:CCC, 6uua:CCC, 6uub:CCC, 6uuc:CCC, 6vjs:C, 5vt0:I, 6vu3:AA, 7vwy:C, 7vwz:C, 6vyq:AA, 6vyr:AA, 6vys:AA, 6vyt:AA, 6vyu:AA, 6vyw:AA, 6vz2:AA, 6vz5:AA, 6vz7:AA, 6vzj:AA, 7w5w:C, 7w5x:C, 7w5y:C, 6wmu:C, 6x6t:AA, 6x7f:AA, 6x7k:AA, 6x9q:AA, 6xas:I, 6xdq:AA, 6xdr:AA, 6xgf:AA, 6xh7:C, 6xh8:C, 6xij:AA, 6xl5:C, 6xl9:C, 6xlj:C, 6xll:C, 6xlm:C, 6xln:C, 4xsx:C, 4xsx:I, 4xsy:C, 4xsy:I, 4xsz:C, 4xsz:I, 7xue:I, 7xui:I, 8y6u:C, 4yfn:I, 4yfx:C, 4yln:C, 4yln:I, 4yln:O, 4ylo:C, 4ylo:I, 4ylo:O, 4ylp:C, 4ylp:I, 4ylp:O, 6z9p:X, 6z9q:X, 6z9r:X, 6z9s:X, 6z9t:X, 4zh2:C, 4zh2:I, 4zh3:C, 4zh3:I, 4zh4:C, 4zh4:I
11 8pen:I 1321 39 0.1325 0.0083 0.2821 1.4 8aby:C, 8abz:C, 8ac1:C, 8acp:C, 8ad1:C, 6alf:I, 6alg:I, 6alh:I, 6asx:I, 6bjs:I, 6c6t:I, 6c6u:I, 7d7c:C, 8eg7:I, 8eh8:I, 8eh9:I, 8eha:I, 8ehf:I, 8ehi:I, 8f3c:I, 8fix:C, 8fiy:C, 6flp:C, 8fvr:F, 8fvw:F, 8g00:I, 8g1s:I, 8g2w:I, 8g4w:I, 8g7e:I, 8g8z:I, 6jbq:C, 7mko:C, 8pbl:F, 8pfg:I, 8pfj:I, 8phk:I, 8pib:I, 8pid:I, 8pim:I, 6rh3:C, 6ri7:C, 6ri9:C, 6rin:C, 6rip:C, 8upo:AA, 8upr:AA, 8uql:AA, 8uqm:AA, 8uqp:AA, 8ur0:AA, 8urh:AA, 8uri:AA, 8urx:AA, 8ury:AA, 7uwe:I, 7uwh:I, 6x26:I, 6x2f:I, 6x2n:I, 6x43:I, 6x4w:I, 6x4y:I, 6x50:I, 6xav:I, 6xii:AA, 7xug:I, 6ztj:CC, 6ztl:CC, 6ztm:CC, 6ztn:CC, 6zto:CC, 6ztp:CC, 6zu1:CC
12 7yp9:C 1230 39 0.1325 0.0089 0.2821 1.4
13 4au7:A 243 31 0.1325 0.0453 0.3548 1.4 4au7:B, 3rq4:A
14 3qxy:A 420 60 0.2530 0.0500 0.3500 2.1 3qxy:B, 3rc0:A, 3rc0:B
15 5v93:d 201 38 0.1205 0.0498 0.2632 5.7 7kgb:d, 7msc:d, 7msh:d, 7msm:d, 7msz:d, 7mt2:d, 7mt3:d, 7mt7:d, 7sfr:d
16 7vud:A 535 56 0.2289 0.0355 0.3393 5.8
17 3nu7:B 359 38 0.1325 0.0306 0.2895 6.4 3nu7:A, 3nub:A, 3nub:B, 3nys:A, 3nyt:A
18 8ap6:G1 300 25 0.1446 0.0400 0.4800 6.7 8ap6:G2, 8ap9:G, 8apa:G1, 8apc:G1, 8apf:G1
19 3nx3:A 388 38 0.1566 0.0335 0.3421 6.9
20 5af7:B 391 39 0.1446 0.0307 0.3077 8.9 5af7:A, 5ahs:A, 5ahs:B, 5ahs:C, 5ahs:E, 5ahs:F, 5ahs:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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