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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MRLAYVKNHEIYGEKLLGLTLRERIEKTLQRAGFDVRFFDELSLEEAEDYLIILEPVLILERDLLLEGRKILVSDGFTVG
YFFGGDFRTVFDGNLQSSIEKYLSLNNLESYEIWAIKLSNDNLKTAEKLLLSSLIRAAFARITLPLARALLRIGLTPDAV
TIIGTTASVAGALVLFPMGKLFPGACVVWFFVLFDMLDGAMARLRSGGTRFGAVLDAACDRISDGAVFSGLLWWIAFGMR
DRLLVVATLTCLVTSQVISYIKARAEASGLRGDGGIIERPERLIIVLVGAGVSDFPFIAWPPALPVAMWVLAVASVITLG
QRLHTVWTSPGATDRI

The query sequence (length=336) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6wm5:A 337 337 1.0000 0.9970 0.9970 0.0 6wm5:C, 6wmv:A, 6wmv:C
2 5d92:D 342 335 0.6548 0.6433 0.6567 2.13e-141 5d91:A, 5d92:A, 5d92:B, 5d92:C
3 6h5a:B 209 195 0.5000 0.8038 0.8615 6.77e-117 6h59:A, 6h59:B, 6h5a:A
4 4o6m:B 341 244 0.4762 0.4692 0.6557 6.62e-100 4o6m:A, 4o6n:A, 4o6n:B, 4q7c:A, 4q7c:B
5 8gyw:B 380 79 0.0565 0.0500 0.2405 0.029 8gyw:A, 8gyx:B, 8gyx:A
6 7pow:B 204 47 0.0506 0.0833 0.3617 0.25 7b1k:A, 7b1k:B, 7b1l:A, 7b1l:B, 7b1n:A, 7b1n:B, 7pow:A
7 8ero:A 364 79 0.0595 0.0549 0.2532 0.44 8ero:B, 8erp:B, 8erp:A
8 2etz:A 108 34 0.0476 0.1481 0.4706 3.8 2eu0:A
9 6pdq:D 142 29 0.0327 0.0775 0.3793 4.2 6pdq:A
10 7ouf:E 278 50 0.0446 0.0540 0.3000 8.1 7ouf:B, 7oug:E, 7oug:B, 7ouh:E, 7ouh:B, 7pel:B, 7pel:E
11 1q9u:B 128 61 0.0565 0.1484 0.3115 9.7
12 4mnd:A 408 122 0.0804 0.0662 0.2213 10.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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