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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MRLAYVKNHEIYGEKLLGLTLRERIEKTLQRAGFDVRFFDELSLEEAEDYLIILEPVLILERDLLLEGRKILVSDGFTVG
YFFGGDFRTVFDGNLQSSIEKYLSLNNLESYEIWAIKLSNDNLKTAEKLLLSSLIGSRGLFAAIFLPIARLLADWGVSPD
AVTVVGTLGVMAGALIFYPMGQLFWGTVVITVFVFSDIIDGLMARLLFREGPWGAFLDSYLDRVGDSSVFTGIVIWFFLG
GANPTIAILALICLVLSSLVSYSKARAEGLGLTANVGIAERSERLVVVLVATGLVGLGIPSWVLLVVLIVLAIASVVTIF
QRVLTVREQAKAWTA

The query sequence (length=335) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5d92:D 342 342 1.0000 0.9795 0.9795 0.0 5d91:A, 5d92:A, 5d92:B, 5d92:C
2 6wm5:A 337 328 0.6687 0.6647 0.6829 2.40e-148 6wm5:C, 6wmv:A, 6wmv:C
3 4o6m:B 341 349 0.5761 0.5660 0.5530 8.23e-107 4o6m:A, 4o6n:A, 4o6n:B, 4q7c:A, 4q7c:B
4 6h5a:B 209 191 0.2448 0.3923 0.4293 8.46e-38 6h59:A, 6h59:B, 6h5a:A
5 4mnd:A 408 214 0.1642 0.1348 0.2570 3.79e-05
6 6m53:B 339 100 0.0836 0.0826 0.2800 1.0 7bp1:A, 7bp1:C, 7bp1:D, 7bpc:A, 7bpc:C, 6m53:A, 6m53:C, 6m53:D
7 8wcn:A 379 139 0.1045 0.0923 0.2518 2.6 8wcn:B
8 2etz:A 108 36 0.0507 0.1574 0.4722 4.1 2eu0:A
9 6pdq:D 142 29 0.0328 0.0775 0.3793 6.5 6pdq:A
10 8gyw:B 380 165 0.1104 0.0974 0.2242 7.4 8gyw:A, 8gyx:B, 8gyx:A
11 7pkt:b 304 29 0.0388 0.0428 0.4483 8.7
12 5fl7:H 113 58 0.0448 0.1327 0.2586 9.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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