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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MRLATIRTNGTTIAARVESENTATTIEGFANVGELLQESNWRELAENAAGEAVTFENKELDAVVPAPKKIVCVGLNYANH
IKEMGRDLPDTPTLFVKFPDALIGPFDDVVVPEWANKALDWEGEMAVIIGKRARRVKQADAAEYIAGYAVMNDYTTRDFQ
YAAPAKTPQWHQGKSLEKSAGFGPWMTTPDSFEFGGELATYLEGEKVQSTPTNDLVFSPEKLIEYITHIYPLDAGDVIVT
GTPGGVGHARNPQRYIGDGETVKVEIAGLGFIENKTVFEL

The query sequence (length=280) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6j5x:A 280 280 1.0000 1.0000 1.0000 0.0 6j5x:B
2 6iym:A 277 211 0.2893 0.2924 0.3839 1.02e-44 6iym:B
3 8sky:B 303 259 0.3179 0.2937 0.3436 1.61e-43 8sky:A, 8sut:A, 8sut:B, 8suu:A, 8suu:B
4 6v77:B 279 243 0.3071 0.3082 0.3539 3.00e-43 6v77:A
5 8gsr:A 290 205 0.2607 0.2517 0.3561 5.30e-37 8gsr:B, 8gsr:C, 8gsr:D, 8gst:A, 8gst:B, 8gst:C, 8gst:D
6 3r6o:A 265 234 0.2821 0.2981 0.3376 5.96e-35
7 4dbh:A 269 219 0.2571 0.2677 0.3288 2.48e-33 4dbf:A, 4dbf:B, 4dbh:B
8 6fog:A 218 183 0.2429 0.3119 0.3716 1.29e-30 6fog:C, 6fog:G, 6fog:E, 6fog:F, 6fog:H, 6fog:D, 6fog:B, 6foh:A, 6foh:B, 1saw:A, 1saw:B
9 6sbi:A 216 183 0.2464 0.3194 0.3770 2.02e-30 6sbi:B, 6sbi:C, 6sbi:D, 6sbj:A, 6sbj:B, 6sbj:C, 6sbj:D
10 3qdf:A 252 242 0.2821 0.3135 0.3264 2.58e-27
11 1gtt:A 421 194 0.2429 0.1615 0.3505 3.36e-25 1gtt:B, 1gtt:C, 1gtt:D, 1i7o:A, 1i7o:B, 1i7o:C, 1i7o:D
12 1gtt:A 421 193 0.2036 0.1354 0.2953 1.16e-09 1gtt:B, 1gtt:C, 1gtt:D, 1i7o:A, 1i7o:B, 1i7o:C, 1i7o:D
13 6j5y:A 233 224 0.2393 0.2876 0.2991 1.88e-23
14 3v77:A 224 209 0.2393 0.2991 0.3206 2.33e-23 3v77:B, 3v77:C, 3v77:D, 3v77:E, 3v77:F
15 1nr9:A 211 187 0.2250 0.2986 0.3369 6.34e-21 1nr9:B, 1nr9:C, 1nr9:D
16 6jvw:B 264 220 0.2214 0.2348 0.2818 2.22e-19 6jvw:A
17 1nkq:A 247 216 0.1964 0.2227 0.2546 4.82e-14 1nkq:B, 1nkq:C, 1nkq:D, 1nkq:E, 1nkq:F
18 3lzk:C 343 210 0.2000 0.1633 0.2667 9.21e-07 3lzk:A, 3lzk:B, 3lzk:D
19 3bqb:X 291 159 0.1429 0.1375 0.2516 2.55e-05 3bqb:A, 3bqb:Z, 3bqb:Y, 2q1a:X, 2q1c:X, 2q1d:X
20 1hyo:B 419 86 0.1036 0.0692 0.3372 0.006 1hyo:A, 2hzy:A, 2hzy:B, 1qcn:A, 1qcn:B, 1qco:A, 1qco:B, 1qqj:A, 1qqj:B
21 5ti1:H 430 89 0.0929 0.0605 0.2921 0.22 5ti1:A, 5ti1:B, 5ti1:C, 5ti1:D, 5ti1:E, 5ti1:F, 5ti1:G
22 8hkd:B 411 64 0.0679 0.0462 0.2969 2.4 8hkd:A, 1izo:A, 1izo:B, 1izo:C, 7wyg:A, 7wyg:B, 2zqj:A, 2zqj:B, 2zqj:C, 2zqx:A, 2zqx:B, 2zqx:C
23 5ayy:A 289 91 0.1000 0.0969 0.3077 5.0 5ayy:B, 5ayy:C, 5ayy:D, 5ayy:E, 5ayy:F, 5ayy:G, 5ayy:H, 5ayy:I, 5ayz:A, 5ayz:B, 5ayz:C, 5ayz:D, 5ayz:E, 5ayz:F, 5ayz:G, 5ayz:H, 5ayz:I, 5ayz:J, 5ayz:K, 5ayz:L, 4kww:A, 4kww:B, 4kww:C, 4kww:D, 4kww:E, 4kww:F
24 5xj2:A 454 43 0.0571 0.0352 0.3721 8.8 5xj2:B, 5xj2:C, 5xj2:D, 5zq0:A, 5zq1:A, 5zq8:B, 5zq8:A, 5zth:A
25 5m3f:A 1459 101 0.0964 0.0185 0.2673 9.5 5n61:A
26 6hls:A 1431 101 0.0964 0.0189 0.2673 9.7 5lmx:A
27 4c3h:A 1523 101 0.0964 0.0177 0.2673 10.0 4c2m:A, 4c2m:P, 4c3j:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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