Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENKTKGEPG

The query sequence (length=68) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1ahd:P 68 68 1.0000 1.0000 1.0000 6.36e-45
2 2r5z:A 75 59 0.8088 0.7333 0.9322 4.07e-34 9ant:A, 9ant:B, 5jlw:A, 5jlw:D, 5jlx:A, 5jlx:D, 2r5y:A, 4xic:A, 4xic:D, 4xid:A, 4xid:D
3 4uus:A 67 56 0.7647 0.7761 0.9286 9.13e-32 4uus:E
4 4cyc:A 66 56 0.7353 0.7576 0.8929 8.75e-30 1b8i:A
5 2h1k:B 60 58 0.6176 0.7000 0.7241 3.69e-24 2h1k:A
6 1puf:A 77 64 0.6176 0.5455 0.6562 3.29e-23 2lp0:A
7 6es3:K 72 59 0.5441 0.5139 0.6271 8.83e-20 6es2:K, 6es2:L, 6es3:M, 5lty:K, 5lty:M, 5lux:K, 5lux:L, 7q3o:K, 7q3o:C, 7q3o:E, 7q3o:G, 7q4n:K, 7q4n:C
8 5zjr:A 64 57 0.5147 0.5469 0.6140 2.20e-19 5zjq:A, 5zjs:A, 5zjt:A, 5zjt:E
9 1b72:A 68 54 0.5294 0.5294 0.6667 3.58e-19
10 2me6:A 71 57 0.5000 0.4789 0.5965 1.62e-18
11 8eml:A 58 57 0.5294 0.6207 0.6316 2.79e-18 8eml:B
12 3a01:A 78 60 0.4118 0.3590 0.4667 7.63e-15 3a01:E
13 1jgg:A 57 57 0.4412 0.5263 0.5263 4.36e-13 1jgg:B
14 5eea:G 63 54 0.4118 0.4444 0.5185 6.05e-13 8byx:B, 8byx:J, 8byx:A, 8byx:K, 8byx:G, 8byx:L, 5edn:A, 5edn:B, 5edn:G, 5edn:J, 5eea:B, 5eea:A, 5eea:J, 5ef6:A, 5ef6:J, 5ef6:B, 5ef6:G, 5eg0:B, 5ego:B, 5no6:A, 5no6:B, 7psx:A, 7psx:B, 7psx:G, 7psx:J
15 8pna:A 67 58 0.3382 0.3433 0.3966 1.58e-12 8pm5:A, 8pm5:D, 8pm5:G, 8pm5:M, 8pm5:J, 8pm7:A, 8pm7:C, 8pm7:E, 8pm7:G, 8pmc:A, 8pmc:C, 8pmc:E, 8pmc:G, 8pmf:A, 8pmn:A, 8pmv:A, 8pmv:D, 8pmv:G, 8pmv:J, 8pn4:A, 8pn4:D, 8pn4:G, 8pn4:M, 8pn4:J, 8pnc:A, 8pnc:K, 8pnc:E, 8pnc:H
16 2ld5:A 67 54 0.3824 0.3881 0.4815 5.63e-12
17 1ig7:A 58 57 0.3971 0.4655 0.4737 1.25e-11
18 3a01:F 61 61 0.4118 0.4590 0.4590 3.17e-11 3a01:B, 3lnq:A
19 6m3d:C 108 56 0.3971 0.2500 0.4821 1.08e-10 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
20 6m3d:C 108 48 0.3382 0.2130 0.4792 3.85e-09 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
21 4rdu:D 62 57 0.3529 0.3871 0.4211 1.33e-10 4rdu:A, 4xrs:I, 4xrs:G
22 3rkq:A 58 57 0.3824 0.4483 0.4561 1.73e-10 3rkq:B
23 1nk2:P 77 63 0.4118 0.3636 0.4444 4.42e-10 1nk3:P
24 8osb:E 62 56 0.3824 0.4194 0.4643 5.58e-10
25 1zq3:P 68 59 0.3676 0.3676 0.4237 2.35e-09
26 2lkx:A 68 57 0.3824 0.3824 0.4561 3.97e-09
27 4qtr:C 57 55 0.3676 0.4386 0.4545 7.68e-09 4qtr:A, 4qtr:B, 4qtr:D
28 5flv:M 229 52 0.3529 0.1048 0.4615 1.37e-08 5flv:A, 5flv:E, 5flv:I, 4s0h:A, 4s0h:B, 4s0h:E, 4s0h:F, 6wc2:N, 6wc2:M, 6wc2:O, 6wc5:I, 6wc5:N, 2x6u:A, 2x6v:A, 2x6v:B
29 3cmy:A 60 58 0.3382 0.3833 0.3966 8.14e-08
30 1fjl:A 65 61 0.3382 0.3538 0.3770 2.40e-07 1fjl:B, 1fjl:C
31 4rbo:A 55 49 0.2500 0.3091 0.3469 7.23e-06 4rbo:D
32 9b8u:B 66 51 0.2794 0.2879 0.3725 9.83e-05 9b8u:A, 9b8u:C, 9b8u:D
33 6e8c:A 135 54 0.3088 0.1556 0.3889 2.68e-04 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
34 6e8c:A 135 60 0.2500 0.1259 0.2833 0.005 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
35 8ejo:A 56 54 0.2647 0.3214 0.3333 0.001 8ejo:B, 8ejp:A, 8ejp:B
36 8ik5:C 67 57 0.2794 0.2836 0.3333 0.003 8ike:C, 8ilw:C
37 1le8:A 53 42 0.2059 0.2642 0.3333 0.006 1akh:A, 1yrn:A
38 4egc:A 539 40 0.2206 0.0278 0.3750 0.006
39 5hod:A 61 57 0.2794 0.3115 0.3333 0.007 5hod:D
40 1lfu:P 82 63 0.2647 0.2195 0.2857 0.016 1b72:B, 1b8i:B, 4cyc:B, 1puf:B, 2r5y:B, 2r5z:B, 4uus:B, 4uus:F, 5zjq:B, 5zjr:B, 5zjs:B, 5zjt:B
41 1gt0:C 137 45 0.2500 0.1241 0.3778 0.029 1cqt:A, 1cqt:B, 1e3o:C, 1hf0:A, 1hf0:B, 1o4x:A, 1oct:C
42 3d1n:I 150 58 0.2794 0.1267 0.3276 0.41 3d1n:K, 3d1n:J, 3d1n:L, 3d1n:M, 3d1n:N, 3d1n:O, 3d1n:P
43 3l1p:A 147 25 0.1618 0.0748 0.4400 0.99 8bx2:A, 6ht5:E, 3l1p:B, 8sps:L, 8spu:L, 6t90:K, 7u0g:M, 7u0g:L, 7u0i:L, 7u0i:M
44 7alp:U 1935 40 0.2206 0.0078 0.3750 1.1
45 8r6y:A 1991 40 0.2206 0.0075 0.3750 1.1 8as7:A, 8r6w:A, 6xya:B
46 8asd:A 1826 40 0.2206 0.0082 0.3750 1.1
47 8asb:A 1715 40 0.2206 0.0087 0.3750 1.1 8as6:A, 8asg:A, 8r6u:A
48 8bx1:A 127 24 0.1618 0.0866 0.4583 1.2
49 8g8e:X 140 25 0.1618 0.0786 0.4400 1.4 8g87:X, 8g88:X, 8g8b:X, 8g8g:X, 8sps:M, 7u0g:K
50 3f98:A 377 37 0.1912 0.0345 0.3514 2.2 3f97:A, 3f97:B, 3f98:B, 3f98:C, 3f9c:A, 3f9c:B, 5i8p:A, 5i8p:B, 5i9i:A, 5i9i:B, 5jad:A, 5jah:A, 5jal:A, 5jan:A, 5jao:A, 5jap:A, 5jar:A, 5jas:A, 5jat:A, 5jau:A, 5lp1:A, 5lyy:A, 5lz2:A, 5lz4:A, 5lz5:A, 5lz7:A, 5lz8:A, 5lz9:A, 6m06:A, 6m06:B, 6m07:A, 6m07:B, 6m08:B, 5ye7:B, 5ye7:A, 5ye8:B, 5ye8:A, 5ye9:A, 5ye9:B, 5yea:A, 5yea:B
51 7xrc:C 134 25 0.1471 0.0746 0.4000 2.6 2xsd:C
52 5x22:D 1438 53 0.1765 0.0083 0.2264 9.8

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218