Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MRKQMVVVRAEGGGGINPEIRKNEDKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSCVKHNKANGDNVGPLLLKKQ

The query sequence (length=78) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3s2r:B 78 78 1.0000 1.0000 1.0000 3.88e-54 3s2q:A, 3s2q:B, 3s2r:A
2 3fnv:B 68 63 0.4615 0.5294 0.5714 1.28e-20 3fnv:A, 4oo7:A, 4oo7:B, 4ooa:A, 4ooa:B, 4ooa:C, 4ooa:D, 4ooa:E, 4ooa:F, 7p0p:A, 7p0p:B, 7p0p:C, 7p0p:D
3 3ew0:A 77 63 0.3974 0.4026 0.4921 1.75e-17 6de9:A, 3ew0:B, 4ezf:A, 4ezf:B, 4f1e:A, 4f1e:B, 4f1e:C, 4f1e:D, 4f1e:E, 4f1e:F, 4f1e:G, 4f1e:H, 4f1e:I, 4f1e:J, 4f1e:K, 4f1e:L, 4f1e:M, 4f1e:N, 4f1e:O, 4f1e:P, 4f1e:Q, 4f1e:R, 4f28:A, 4f28:B, 4f2c:A, 4f2c:B, 3lpq:A, 3lpq:B, 7p0o:A, 7p0o:B, 2qd0:A, 2qd0:B, 2qh7:A, 2qh7:B, 2r13:A, 3ree:A
4 7yvz:A 63 60 0.3590 0.4444 0.4667 5.52e-15
5 6avj:A 92 36 0.1795 0.1522 0.3889 0.84 6avj:B, 6avj:C
6 3tbo:A 54 18 0.1282 0.1852 0.5556 1.1
7 7rxb:A 548 48 0.2179 0.0310 0.3542 1.3 7rxb:B
8 7rx3:B 591 48 0.2179 0.0288 0.3542 1.3 7rx3:A, 7rxa:A, 7rxa:B
9 7rx2:B 615 48 0.2179 0.0276 0.3542 1.3 6e0h:B, 6e0h:A, 6e1o:B, 6e1o:A, 7rwj:B, 7rwj:A, 7rx2:A
10 7rxg:B 650 48 0.2179 0.0262 0.3542 1.3 7rxg:A, 7rxh:A
11 4ntc:A 325 47 0.2051 0.0492 0.3404 2.5 4ntc:B
12 7twc:A 416 53 0.1795 0.0337 0.2642 4.4 7twe:A, 7twe:B
13 5frp:A 677 25 0.1282 0.0148 0.4000 5.6 5frp:B, 5frs:A
14 3k2h:A 503 20 0.1154 0.0179 0.4500 6.1 3k2h:B, 3kjr:A, 3kjr:B, 3nrr:A, 3nrr:B
15 8a1r:A 593 20 0.1282 0.0169 0.5000 6.3 8a1r:B, 7b02:A, 6fmu:A, 6fmz:A, 6fp4:A, 6ftc:A, 3h4k:A, 4la1:A, 4la1:B, 7npx:A, 7npx:B, 8pdd:A, 8pdd:B, 8pl0:A, 8pl0:B, 8pl1:A, 8pl1:B, 8pl2:A, 8pl2:B, 8pl3:A, 8pl3:B, 8pl4:A, 8pl4:B, 8pl5:A, 8pl5:B, 8pl6:A, 8pl7:A, 8pl7:B, 8pl8:A, 8pl9:A, 8pl9:B, 8pla:A, 8pla:B, 8plb:A, 8plb:B, 8plc:A, 8plc:B, 8pld:A, 8pld:B, 8ple:A, 8ple:B, 8plf:A, 8plf:B, 8plg:A, 8plh:A, 8pli:A, 8pli:B, 8plj:A, 8plj:B, 8plk:A, 8plk:B, 8pll:A, 8plm:A, 8pln:A, 8plo:A, 8plo:B, 8plp:A, 8plp:B, 8plq:A, 8plq:B, 8plr:A, 8plr:B, 8pls:A, 8pls:B, 8plt:A, 8plt:B, 8plu:A, 8plu:B, 8plv:A, 8plv:B, 8plw:A, 8plw:B, 8plx:A, 8plx:B, 8ply:A, 8ply:B, 6rtj:A, 6rtm:A, 6rto:A, 2v6o:A, 2x8c:A, 2x8c:B, 2x8g:A, 2x8h:A, 2x99:A, 6zlb:A, 6zlp:A, 6zp3:A, 6zst:A
16 4gmk:A 227 11 0.1154 0.0396 0.8182 6.4 4gmk:B
17 6m35:A 310 27 0.1282 0.0323 0.3704 8.3 6m35:B, 6m35:C, 6m35:D, 6m35:E, 6m35:F, 6m35:G, 6m35:H, 6m3x:A, 6m3x:B, 6m3x:C, 6m3x:D, 6m3x:E, 6m3x:F, 6m3x:G, 6m3x:H, 6m3x:I, 6m3x:J, 6m3x:K, 6m3x:L, 6m3x:M, 6m3x:N, 6m3x:O, 6m3x:P, 6m3x:Q, 6m3x:R, 6m3x:S, 6m3x:T, 6m3x:U, 6m3x:V, 6m3x:W, 6m3x:X
18 1gud:A 288 30 0.1538 0.0417 0.4000 9.0 1rpj:A, 8wl7:A, 8wl9:A, 8wlb:A

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218