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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MRKITVLSFITLDGVMQAPGGPEEDTSGGFKYGGWTAPYEDEVSGKIMEKQMKPADYLLGRKTFEIFASYWPEHADFWPG
INDGTKYVMSKTVKKSDWKNSVFLESLADIKKLKNSEGSDIQVWGSGELIQLLFKNDLVDELWLKIFPVTLNTGKRLFGD
GTIPAAFTLIESSVTPSGVIIANYKRAGEVKTGTVGAHHHHHH

The query sequence (length=203) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8jsv:I 203 203 1.0000 1.0000 1.0000 5.03e-151 8jsv:A, 8jsv:B, 8jsv:C, 8jsv:D, 8jsv:E, 8jsv:F, 8jsv:G, 8jsv:H, 8jsv:J, 8jsy:A, 8jsy:B, 8jsy:C, 8jsy:D, 8jsy:E, 8jsy:F, 8jsy:G, 8jsy:H, 8jsy:I, 8jsy:J, 8jt0:A, 8jt0:B, 8jt0:C, 8jt0:D, 8jt0:E, 8jt0:F, 8jt0:G, 8jt0:H, 8jt0:I, 8jt0:J
2 3kgy:A 218 136 0.1773 0.1651 0.2647 1.42e-04 3kgy:B
3 2xw7:A 175 41 0.0690 0.0800 0.3415 0.16 2xw7:B
4 3tqw:A 235 18 0.0493 0.0426 0.5556 2.5 3tqw:B
5 6joo:A 834 66 0.0985 0.0240 0.3030 2.6
6 6vfy:F 304 33 0.0640 0.0428 0.3939 3.3 2v1o:A, 2v1o:D, 2v1o:B, 2v1o:C, 2v1o:E, 2v1o:F, 6vfy:D, 6vfy:E, 4zv3:A, 4zv3:B, 4zv3:C
7 5tsq:A 312 58 0.0739 0.0481 0.2586 3.8
8 2wwb:A 476 50 0.0788 0.0336 0.3200 6.7 8b5l:s, 8b6c:K, 4cg6:A, 8dnx:A, 8dny:A, 8dnz:A, 8do0:A, 8do1:A, 8do2:A, 8do3:A, 8rjb:1, 8rjc:1, 8rjd:1, 7tm3:1, 7tut:1
9 1e3p:A 645 24 0.0443 0.0140 0.3750 6.9
10 8b6l:A 425 50 0.0788 0.0376 0.3200 7.8
11 6ftg:x 426 50 0.0788 0.0376 0.3200 8.2 8btk:SX, 6fti:x, 6ftj:x, 3j7q:1, 3j7r:1, 3jc2:1, 8oj0:1, 8oj8:1, 6r7q:XX, 6w6l:1, 7zl3:A
12 7wjn:A 808 35 0.0640 0.0161 0.3714 8.5 7wjn:B, 7wjo:A, 7wjo:B, 7x05:A, 7x05:B, 7x06:A, 7x06:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218