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BioLiP
>protein
MRKIGIIGGTFDPPHYGHLLIANEVYHALNLEEVWFLPNQIPPHKQGRDITSVESRLQMLELATEAEEHFSICLEELSRK
GPSYTYDTMLQLTKKYPDVQFHFIIGGDMVEYLPKWYNIEALLDLVTFVGVARPGYKLRTPYPITTVEIPEFAVSSSLLR
ERYKEKKTCKYLLPEKVQVYIERNGLYES

The query sequence (length=189) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3e27:C 189 189 1.0000 1.0000 1.0000 5.13e-141 3e27:A, 3e27:B, 3e27:D, 3hfj:A, 3hfj:B, 3mla:A, 3mla:B, 3mlb:A, 3mlb:B, 3mmx:B, 3mmx:C, 3mmx:A, 3mmx:D, 2qtn:B, 2qtr:A, 2qtr:B, 2qtr:C
2 1kaq:A 186 186 0.5503 0.5591 0.5591 5.41e-81 1kaq:B, 1kaq:C, 1kaq:D, 1kaq:E, 1kaq:F
3 8aih:A 184 187 0.4709 0.4837 0.4759 4.24e-59 8aii:A, 9fyb:A, 9fyb:B
4 2h2a:A 189 188 0.3757 0.3757 0.3777 5.92e-46 2h29:A, 2h29:B, 2h2a:B
5 5das:A 198 197 0.3915 0.3737 0.3756 6.27e-45 6buv:B, 4s1o:A, 4ybr:A, 4ybr:B
6 5das:C 180 186 0.3810 0.4000 0.3871 1.41e-43 5das:B, 5das:D, 4s1o:B
7 4ymi:B 198 197 0.3810 0.3636 0.3655 4.41e-43 5db4:A, 5deo:A, 5deo:B, 5deo:C, 5deo:D, 5vir:A, 5vir:B, 4ymi:A
8 5db4:B 175 188 0.3492 0.3771 0.3511 1.56e-36
9 1k4m:A 213 208 0.3915 0.3474 0.3558 2.96e-36 1k4m:B, 1k4m:C
10 1yum:A 212 211 0.3598 0.3208 0.3223 5.72e-29 1yum:B, 1yum:C, 1yum:D, 1yun:A, 1yun:B
11 4wso:A 227 164 0.2751 0.2291 0.3171 8.76e-22 4wso:B
12 5llt:A 205 143 0.1799 0.1659 0.2378 6.99e-06 5llt:B, 5lm3:A
13 1kqo:A 233 156 0.2063 0.1674 0.2500 0.009 1gzu:A, 1gzu:B, 1gzu:C, 1kqn:A, 1kqn:B, 1kqn:C, 1kqn:D, 1kqn:E, 1kqn:F, 1kqo:B, 1kqo:C, 1kqo:D, 1kqo:E, 1kqo:F, 1kr2:A, 1kr2:B, 1kr2:C, 1kr2:D, 1kr2:E, 1kr2:F, 8qe8:4, 8qe8:3
14 3otw:A 157 67 0.1217 0.1465 0.3433 0.009 3otw:D, 3otw:B, 3otw:C, 3otw:E, 3otw:F
15 1nup:A 213 34 0.0635 0.0563 0.3529 0.29 1nup:B, 1nuq:A, 1nuq:B, 1nus:A, 1nus:B, 1nut:A, 1nut:B, 1nuu:A, 1nuu:B
16 4o29:A 207 121 0.1323 0.1208 0.2066 0.35
17 4nah:C 160 58 0.1058 0.1250 0.3448 0.36 3f3m:A, 4nah:A, 4nah:B, 4nah:D, 4nah:E, 4nah:F, 4nat:A, 4nat:B, 4nat:C, 4nau:A, 4nau:B, 4nau:C
18 1o6b:A 163 62 0.1058 0.1227 0.3226 0.44
19 6ifc:A 132 61 0.0952 0.1364 0.2951 1.9 6ifc:C, 6ifc:E, 6ifc:G
20 3nd6:A 152 19 0.0582 0.0724 0.5789 2.2 3nd6:B, 3nd6:C, 3nd6:D, 3nd6:E, 3nd6:F, 3nd7:A, 3nd7:B, 3nd7:C, 3nd7:D, 3nd7:E, 3nd7:F
21 1lw7:A 344 29 0.0635 0.0349 0.4138 4.7
22 6zha:A 3707 135 0.1746 0.0089 0.2444 4.8 6zh8:A
23 6zhe:F 3731 135 0.1746 0.0088 0.2444 4.8
24 6zhe:A 3768 135 0.1746 0.0088 0.2444 5.0
25 8cfu:A 467 119 0.1481 0.0600 0.2353 5.2 8ajs:AAA, 8ajs:DDD, 8ajs:BBB, 8ajs:CCC, 8ajt:AAA, 8ajt:DDD, 8ajt:BBB, 8ajt:CCC, 8aju:AAA, 8aju:CCC, 8ajv:AAA, 8ajv:DDD, 8ajv:BBB, 8ajv:CCC, 8ajv:FFF, 8ajv:III, 8ajv:GGG, 8ajv:HHH, 8ajw:AAA, 8ajw:DDD, 8ajw:BBB, 8ajw:CCC, 8azf:A, 8azf:C, 8cfb:A, 8cfb:D, 8cfb:B, 8cfb:C, 8cfc:A, 8cfc:D, 8cfc:B, 8cfc:C, 8cfd:A, 8cfd:D, 8cfd:B, 8cfd:C, 8cfe:A, 8cfe:D, 8cfe:B, 8cfe:C, 8cfg:A, 8cfg:D, 8cfg:B, 8cfg:C, 8cfh:A, 8cfh:D, 8cfh:B, 8cfh:C, 8cfi:A, 8cfi:D, 8cfi:B, 8cfi:C, 8cfj:A, 8cfj:D, 8cfj:B, 8cfj:C, 8cfk:A, 8cfk:D, 8cfk:B, 8cfk:C, 8cfl:A, 8cfl:D, 8cfl:B, 8cfl:C, 8cfm:A, 8cfm:D, 8cfm:B, 8cfm:C, 8cfn:A, 8cfn:C, 8cfo:A, 8cfo:D, 8cfo:B, 8cfo:C, 8cfp:A, 8cfp:D, 8cfp:B, 8cfp:C, 8cfq:A, 8cfq:D, 8cfq:B, 8cfq:C, 8cfr:A, 8cfr:D, 8cfr:B, 8cfr:C, 8cfs:A, 8cfs:D, 8cfs:B, 8cfs:C, 8cft:A, 8cft:D, 8cft:B, 8cft:C, 8cfu:D, 8cfu:B, 8cfu:C, 8cfv:A, 8cfv:D, 8cfv:B, 8cfv:C, 8cfw:A, 8cfw:D, 8cfw:B, 8cfw:C, 8cfx:A, 8cfx:D, 8cfx:B, 8cfx:C, 8cfx:G, 8cfx:J, 8cfx:H, 8cfx:I, 8cfy:A, 8cfy:D, 8cfy:B, 8cfy:C, 8cfy:G, 8cfy:J, 8cfy:H, 8cfy:I, 8cfz:A, 8cfz:D, 8cfz:B, 8cfz:C, 8cfz:H, 8cfz:K, 8cfz:I, 8cfz:J, 8cg0:A, 8cg0:D, 8cg0:B, 8cg0:C, 8cg1:A, 8cg1:D, 8cg1:B, 8cg1:C, 8cg1:G, 8cg1:J, 8cg1:H, 8cg1:I, 8cg2:A, 8cg2:C, 6f3m:A, 6f3m:B, 6f3m:C, 6f3m:D, 6f3n:A, 6f3n:B, 6f3n:C, 6f3n:D, 6f3o:A, 6f3o:B, 6f3o:C, 6f3o:D, 6f3p:A, 6f3p:C, 6f3q:A, 6f3q:B, 6f3q:C, 6f3q:D, 7zd0:A, 7zd0:D, 7zd0:B, 7zd0:C, 7zd1:A, 7zd1:D, 7zd1:B, 7zd1:C, 7zd2:A, 7zd2:D, 7zd2:B, 7zd2:C, 7zd3:A, 7zd3:D, 7zd3:B, 7zd3:C, 7zd4:A, 7zd4:D, 7zd4:B, 7zd4:C
26 7otm:A 3656 135 0.1746 0.0090 0.2444 5.2 7otp:A, 7otv:A, 7otw:A, 7oty:A
27 7nfe:A 3585 135 0.1746 0.0092 0.2444 5.4
28 7k5b:B 4524 120 0.1587 0.0066 0.2500 5.5 8bx8:B, 7k58:B, 7kek:B
29 8bot:A 3528 135 0.1746 0.0094 0.2444 5.6
30 7nfc:A 3562 135 0.1746 0.0093 0.2444 5.9 8bh3:S, 8bh3:A, 8bhv:A, 8bhv:F, 8bhy:A, 8bhy:S, 8bot:F, 8bot:S, 7nfc:F
31 6gyf:B 366 74 0.1111 0.0574 0.2838 6.0 6gye:A, 6gye:B, 6gyf:A, 6gzo:A, 6gzo:B
32 1oht:A 173 29 0.0529 0.0578 0.3448 7.9 7nsx:AAA, 7nsz:AAA, 7nt0:AAA, 7nt0:BBB
33 2qng:A 170 74 0.0899 0.1000 0.2297 8.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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