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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MRIVAADTGGAVLDESFQPVGLIATVAVLVEKPYKTSKRFLVKYADPYNYDLSGRQAIRDEIELAIELAREVSPDVIHLN
STLGGIEVRKLDESTIDALQISDRGKEIWKELSKDLQPLAKKFWEETGIEIIAIGKSSVPVRIAEIYAGIFSVKWALDNV
GGLLVGLPRYMEVEIKKDKIIGKSLDPREGGLYGEVKTEVPQGIKWELYPNPLVRRFMVFEITS

The query sequence (length=224) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4yor:A 227 227 0.9955 0.9824 0.9824 8.14e-159 4yor:B, 4yot:A, 4yot:B, 4yot:C, 4you:A, 4you:C, 4yov:A, 4yov:C, 4yov:E, 4yow:A, 4yow:C, 4yow:E, 4yox:A, 4yox:C, 4yox:E, 4yoy:A, 4yoy:C, 4yoy:E
2 4you:B 199 224 0.8795 0.9899 0.8795 2.73e-133
3 5chi:A 230 227 0.7812 0.7609 0.7709 4.89e-130 5chi:B, 5chi:C
4 7tom:A 498 32 0.0580 0.0261 0.4062 1.4 7tol:A
5 5yfi:H 221 40 0.0625 0.0633 0.3500 3.3
6 8cjf:B 638 39 0.0580 0.0204 0.3333 4.1 8cjd:A, 8cjd:B, 8cje:A, 8cje:B, 8cje:C, 8cje:D, 8cjf:A, 8cjg:A, 8cjg:B, 8jz2:A, 8jz3:A, 8jz4:A, 8jz5:A, 8jz6:A
7 4e34:A 87 48 0.0804 0.2069 0.3750 5.6 4e34:B, 4e35:A, 4e35:B, 5ic3:A, 5ic3:B, 4joe:A, 4joe:B, 4jof:A, 4jof:B, 4jog:A, 4jog:B, 4joh:A, 4joh:B, 4joj:A, 4joj:B, 4jok:A, 4jok:B, 4jop:A, 4jop:B, 4jor:A, 4jor:B, 7jzo:A, 7jzo:B, 7jzp:A, 7jzp:B, 7jzq:A, 7jzr:A, 7jzr:B, 5k4f:A, 5k4f:B, 4k6y:A, 4k6y:B, 4k72:A, 4k72:B, 4k75:A, 4k76:A, 4k76:B, 4k76:C, 4k76:D, 4k78:A, 2lob:A, 4nmo:A, 4nmo:B, 4nmp:A, 4nmp:B, 4nmq:A, 4nmq:B, 4nmr:A, 4nmr:B, 4nms:A, 4nms:B, 4nmt:A, 4nmt:B, 4nmv:A, 4nmv:B, 6ov7:A, 6ov7:B, 4q6h:A, 4q6s:A, 4q6s:B, 6v84:A, 6v84:B, 6xnj:A
8 7dnm:A 336 45 0.0804 0.0536 0.4000 9.4 7dnm:P, 7dnn:A, 7dnn:P

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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