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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MRILVTNDDGIYSPGLWALAEAASQFGEVFVAAPDTHAITIAHPVRAYPHPSPLHAPHFPAYRVRGTPADCVALGLHLFG
PVDLVLSGVNLGSNLGHEIWHSGTVAAAKQGYLFGLSAAAFSVPLNGEVPDFAGLRPWLLRTLETLLRLERPFLVNVNLP
LRPKGFLWTRQSVRAYEGVVIPGEDPMGRPFYWFAPRPLKEAEEGTDRWAVAQGFVSATPLRLDLTDETRLQPTLAH

The query sequence (length=237) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2e6c:A 243 243 1.0000 0.9753 0.9753 1.33e-171 2e6b:A, 2e6b:B, 2e6b:C, 2e6b:D, 2e6c:B, 2e6c:C, 2e6c:D, 2e6h:A, 2e6h:B, 2e6h:C, 2e6h:D
2 2wqk:A 248 235 0.4135 0.3952 0.4170 4.16e-44 2wqk:B
3 1j9j:A 247 245 0.4008 0.3846 0.3878 7.05e-40 1j9j:B, 1j9k:A, 1j9k:B, 1j9l:A, 1j9l:B
4 4xer:A 264 238 0.4093 0.3674 0.4076 5.19e-37 4g9o:A, 4g9o:B, 4gad:A, 4gad:B, 4ryt:A, 4ryu:A, 4ryu:B, 4ryu:C, 4ryu:D, 2v4n:A, 2v4o:A, 2v4o:B, 2v4o:C, 2v4o:D, 4xep:A, 4xer:B, 4xer:C, 4xer:D, 4xgb:A, 4xgb:B, 4xgb:C, 4xgb:D, 4xgp:A, 4xgp:B, 4xgp:C, 4xgp:D, 4xj7:A, 4xj7:B, 4xj7:C, 4xj7:D
5 5ksr:D 259 247 0.3713 0.3398 0.3563 3.92e-32 5ksq:A, 5ksq:B, 5ksr:A, 5ksr:B, 5ksr:C, 5kss:A, 5kss:B, 5kst:A, 5kst:B, 5kst:C, 5kst:D
6 4zg5:D 252 251 0.3797 0.3571 0.3586 2.04e-29 4zg5:A, 4zg5:C, 4zg5:G
7 3ele:A 398 47 0.0464 0.0276 0.2340 0.78 3ele:B, 3ele:C, 3ele:D
8 2cb1:A 404 38 0.0675 0.0396 0.4211 1.2
9 2qll:A 806 29 0.0633 0.0186 0.5172 4.5 1em6:A, 1em6:B, 1exv:A, 1exv:B
10 4upl:A 555 35 0.0591 0.0252 0.4000 5.5 4upl:C
11 2xdq:A 425 40 0.0633 0.0353 0.3750 9.0
12 4e5y:C 290 61 0.0675 0.0552 0.2623 9.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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