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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MRILVTNDDGIQSKGIIVLAELLSEEHEVFVVAPDKERSATGHSITIHVPLWMKKVFISERVVAYSTTGTPADCVKLAYN
VVMDKRVDLIVSGVNRGPNMGMDILHSGTVSGAMEGAMMNIPSIAISSANYESPDFEGAARFLIDFLKEFDFSLLDPFTM
LNINVPAGEIKGWRFTRQSRRRWNDYFEERVSPFGEKYYWMMGEVIEDDDRDDVDYKAVREGYVSITPIHPFLTNEQCLK
KLREVYD

The query sequence (length=247) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1j9j:A 247 247 1.0000 1.0000 1.0000 0.0 1j9j:B, 1j9k:A, 1j9k:B, 1j9l:A, 1j9l:B
2 2wqk:A 248 248 0.4251 0.4234 0.4234 1.12e-58 2wqk:B
3 5ksr:D 259 251 0.3806 0.3629 0.3745 3.94e-53 5ksq:A, 5ksq:B, 5ksr:A, 5ksr:B, 5ksr:C, 5kss:A, 5kss:B, 5kst:A, 5kst:B, 5kst:C, 5kst:D
4 4xer:A 264 237 0.3725 0.3485 0.3882 2.39e-48 4g9o:A, 4g9o:B, 4gad:A, 4gad:B, 4ryt:A, 4ryu:A, 4ryu:B, 4ryu:C, 4ryu:D, 2v4n:A, 2v4o:A, 2v4o:B, 2v4o:C, 2v4o:D, 4xep:A, 4xer:B, 4xer:C, 4xer:D, 4xgb:A, 4xgb:B, 4xgb:C, 4xgb:D, 4xgp:A, 4xgp:B, 4xgp:C, 4xgp:D, 4xj7:A, 4xj7:B, 4xj7:C, 4xj7:D
5 2e6c:A 243 245 0.4049 0.4115 0.4082 1.29e-44 2e6b:A, 2e6b:B, 2e6b:C, 2e6b:D, 2e6c:B, 2e6c:C, 2e6c:D, 2e6h:A, 2e6h:B, 2e6h:C, 2e6h:D
6 4zg5:D 252 254 0.3563 0.3492 0.3465 4.10e-39 4zg5:A, 4zg5:C, 4zg5:G
7 1zav:A 178 27 0.0526 0.0730 0.4815 0.54 1zaw:A, 1zax:A
8 6qm5:A 673 158 0.1457 0.0535 0.2278 2.3 6qm5:B, 6qm9:A, 6qm9:B, 6qma:A, 6qma:B, 6qmb:A, 6qmb:B, 8toi:A, 8toi:B, 8tok:A, 8tok:B, 8tol:A, 8tol:B, 4wis:A, 4wis:B, 4wit:A, 4wit:B
9 8g0l:A 158 55 0.0769 0.1203 0.3455 3.0 7stx:A, 6vp9:A
10 6xkd:A 679 77 0.0688 0.0250 0.2208 4.1
11 7x54:A 285 60 0.0931 0.0807 0.3833 4.4 7x54:B, 7x54:C, 7x54:D, 7x54:E, 7x55:A, 7x55:B, 7x55:C, 7x55:D, 7x55:E, 7x56:A, 7x56:B, 7x56:C, 7x56:D, 7x56:E, 7x59:A, 7x59:B, 7x59:C, 7x59:D, 7x59:E
12 7omi:AAA 661 98 0.1012 0.0378 0.2551 4.5 7omi:BBB, 7omi:CCC, 7omi:DDD, 7omi:EEE, 7omi:FFF, 7oms:AAA, 7oms:DDD, 7oms:CCC, 7oms:BBB, 7oms:FFF, 7oms:EEE, 6t6g:AAA, 6t6g:DDD, 6t6g:CCC, 6t6g:BBB, 6t6g:FFF, 6t6g:EEE, 6t75:AAA, 6t75:DDD, 6t75:CCC, 6t75:BBB, 6t75:FFF, 6t75:EEE, 6t7g:AAA, 6t7g:DDD, 6t7g:CCC, 6t7g:BBB, 6t7g:FFF, 6t7g:EEE
13 5j4u:A 218 54 0.0567 0.0642 0.2593 5.2 5j5n:A, 5j5n:B
14 7mit:E 1438 59 0.0607 0.0104 0.2542 6.2 7mjo:E, 7mjp:E, 7mjq:E, 7y1l:A
15 3mxa:A 301 69 0.0810 0.0664 0.2899 6.4 4aab:A, 4aab:B, 4aad:A, 4aad:B, 4aae:A, 4aae:B, 4aaf:A, 4aaf:B, 4aag:A, 4aag:B, 4aqu:A, 4aqu:B, 4aqx:A, 4aqx:B, 1bp7:A, 1bp7:B, 1bp7:C, 1bp7:D, 6fb0:A, 6fb0:B, 6fb1:A, 6fb1:B, 6fb2:A, 6fb2:B, 6fb5:A, 6fb5:B, 6fb6:A, 6fb6:B, 6fb7:A, 6fb7:B, 6fb8:A, 6fb8:B, 6fb9:A, 6fb9:B, 1g9y:A, 1g9y:B, 1g9z:A, 1g9z:B, 2i3p:A, 2i3p:B, 2i3q:A, 2i3q:B, 3mx9:A, 3mxb:A, 3mxb:B, 3mxb:R, 3mxb:S, 1n3e:A, 1n3e:B, 1n3e:G, 1n3e:H, 1n3f:A, 1n3f:B, 1n3f:G, 1n3f:H, 1t9i:A, 1t9i:B, 1t9j:A, 1t9j:B, 1u0c:A, 1u0c:B, 1u0d:A, 1u0d:B, 2vbj:A, 2vbj:B, 2vbl:A, 2vbl:B, 2vbn:A, 2vbn:B, 2vbo:A, 2vbo:B, 2xe0:A, 2xe0:B
16 5m0p:A 424 38 0.0486 0.0283 0.3158 6.6 4l40:A, 4l54:A, 5m0n:A, 5m0o:A, 5m0o:C, 5m0p:B
17 8hku:L37A 65 35 0.0405 0.1538 0.2857 6.9 8hkv:L37A, 8hky:L37A, 8hkz:L37A, 8hl1:L37A, 8hl2:L37A, 8hl3:L37A, 8hl4:L37A, 8hl5:L37A
18 1j49:A 332 80 0.0729 0.0542 0.2250 7.0 1j49:B
19 3ij6:A 303 28 0.0486 0.0396 0.4286 8.3 3ij6:B, 3ij6:C, 3ij6:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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