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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MRILFIGDVVGSPGRDMVKEYVPKLKTKYKPHFTIINGENAAHGKGLTEKIYHSLIQSGADAITMGNHTWDKKEIFDFID
DVPNLVRPANFPEGTPGKGITYVKANGKELAVINLQGRTFLPPLDDPFLKADELIAEAAKRTPYIFIDFHAEATSEKLAL
GWYTDGRASAVVGTHTHVQTADNRILPKGTAYITDVGMTGPYDGILGMDRETIIKRFKTNLPVRFTVAEGKTTLSGVVID
IDDQTKKAVKIERILINDDHMFFE

The query sequence (length=264) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4b2o:A 264 264 1.0000 1.0000 1.0000 0.0 4b2o:B, 4b2o:C, 4b2o:D
2 2z06:A 252 232 0.4318 0.4524 0.4914 4.26e-75 2z06:B, 2z06:C, 2z06:D
3 1t71:A 281 266 0.3977 0.3737 0.3947 6.12e-57
4 4rh7:A 3005 160 0.1288 0.0113 0.2125 0.37
5 6sc2:B 3930 160 0.1288 0.0087 0.2125 0.38 6rla:A, 6rla:B, 6sc2:A
6 8qma:B 931 138 0.1136 0.0322 0.2174 0.52
7 6rtg:A 503 49 0.0606 0.0318 0.3265 6.6
8 1jqk:A 610 48 0.0644 0.0279 0.3542 6.8 1jqk:B, 1jqk:C, 1jqk:D, 1jqk:E, 1jqk:F
9 6k8t:A 662 20 0.0455 0.0181 0.6000 8.2 6k8t:B, 6k8u:A, 6k8u:B
10 6tfo:C 424 84 0.0871 0.0542 0.2738 8.3 6tfd:A, 6tfd:C, 6tfd:B, 6tfo:A, 6tfo:B
11 5dc3:p0 143 86 0.0833 0.1538 0.2558 9.8 5dgv:p0, 5fci:p0, 6hhq:p0, 5lyb:p0, 6oig:q, 5on6:p0, 4v88:Dq, 4v8t:q

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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