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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MRIGFNFTLGETLPLVRQLAQEGAIDYCELLIDNFMQVPPQELAEAFDVPVGFHIMFSRFIESDEEQLRDFAARLRPYIE
ALRPLYVSDHIAYFSHQGRALYHLGEIDYAADYERVRARAALWQSLLGQTIHFENYPSIVDGGHAAPAFFQRLARDTGAG
VLFDVSNAVCAWRNDGPEVAAWRGVMAGASHFHVGGYAGAFIDEGVTVDTHDRALAQDTLDSLRRHRDVLDKPGATITYE
RDENIDIDGVRADLLALRAIFPR

The query sequence (length=263) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7fc0:E 264 263 1.0000 0.9962 1.0000 0.0 7fc0:B
2 7tcr:A 263 262 0.5475 0.5475 0.5496 4.68e-109 7tcr:B, 7tcu:A, 7tcu:B, 7tcw:A, 7tcw:B, 7tcx:A, 7tcx:B
3 7dz9:B 260 260 0.3574 0.3615 0.3615 1.49e-48 7dz9:A
4 3izy:P 537 111 0.1065 0.0521 0.2523 0.21
5 2oux:A 257 40 0.0570 0.0584 0.3750 0.35 2oux:B
6 1j70:A 512 104 0.1065 0.0547 0.2692 0.65 1g8f:A, 1g8g:A, 1g8g:B, 1g8h:A, 1g8h:B, 1j70:B, 1j70:C, 1jec:A, 1jed:A, 1jed:B, 1jee:A, 1jee:B, 1r6x:A
7 1xd3:A 229 57 0.0570 0.0655 0.2632 1.7 1xd3:C
8 7ri3:C 583 24 0.0380 0.0172 0.4167 3.7 7ri3:A, 7ri3:B, 7ri3:D
9 3a6o:A 585 120 0.1179 0.0530 0.2583 4.9 3a6o:B, 2d2o:A, 2d2o:B, 1g1y:A, 1g1y:B, 1jf5:A, 1jf5:B, 1jf6:A, 1jf6:B, 1ji2:A, 1ji2:B, 1jib:A, 1jib:B, 1jl8:A, 1jl8:B, 1vb9:A, 1vb9:B, 1vfm:A, 1vfm:B, 1vfo:A, 1vfo:B, 1vfu:A, 1vfu:B, 1wzk:A, 1wzk:B, 1wzl:A, 1wzl:B, 1wzm:A, 1wzm:B
10 8h4p:A 326 64 0.0798 0.0644 0.3281 5.9 8h4p:B
11 5y6p:C2 245 69 0.0608 0.0653 0.2319 7.2 5y6p:D2, 5y6p:c3, 5y6p:d3, 5y6p:44, 5y6p:Z5, 5y6p:e8, 5y6p:c8, 5y6p:d8, 5y6p:e9, 5y6p:c9, 5y6p:d9, 5y6p:T8, 5y6p:Y9, 5y6p:aZ, 5y6p:bZ
12 5x8f:B 485 37 0.0532 0.0289 0.3784 7.2 5buq:B, 5bur:A, 5bur:B, 5bus:A, 5bus:B, 5gtd:A, 5gtd:B, 5x8f:A, 5x8f:C, 5x8f:D, 5x8g:A, 5x8g:B, 5x8g:D, 5x8g:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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