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BioLiP
>protein
MRIEDKLYLNRYRTDEENPHLKIKDESICAEKCSDRPCVSCCPADVYEWTESGMEVKFEGCLECGTCRIVCPFGNIEWNY
PRGNYGVLYKFG

The query sequence (length=92) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7koe:D 92 92 1.0000 1.0000 1.0000 1.31e-65 7koe:H
2 2gmh:A 581 83 0.3043 0.0482 0.3373 1.93e-07 2gmh:B, 2gmj:A, 2gmj:B
3 7z0s:B 170 52 0.1848 0.1000 0.3269 9.05e-06 7z0t:B
4 7qv7:A 174 58 0.1630 0.0862 0.2586 2.98e-04 7qv7:G
5 8c0z:C 158 55 0.2065 0.1203 0.3455 6.72e-04 8c0z:F
6 6x6u:B 167 65 0.2174 0.1198 0.3077 0.002 6x1o:B, 6x1o:D, 6x6u:D
7 6cz7:B 234 48 0.1739 0.0684 0.3333 0.002 6cz7:D, 6cz8:D, 6cz8:B, 6cz9:B, 6cz9:D, 6cza:B, 6cza:D
8 7qv7:B 183 46 0.1630 0.0820 0.3261 0.003 7qv7:C, 7qv7:J, 7qv7:N, 7qv7:P, 7qv7:X
9 1bc6:A 77 42 0.1630 0.1948 0.3571 0.006 1bd6:A, 1bqx:A, 1bwe:A
10 2vpw:F 193 74 0.2391 0.1140 0.2973 0.007 2vpw:B, 2vpx:F, 2vpx:B, 2vpy:F, 2vpy:B, 2vpz:F, 2vpz:B
11 5c4i:E 312 56 0.2065 0.0609 0.3393 0.017 5c4i:B, 5exd:E, 5exe:B
12 1kqf:B 289 76 0.2283 0.0727 0.2763 0.042 1kqg:B
13 1clf:A 55 43 0.1630 0.2727 0.3488 0.048
14 2vkr:A 103 57 0.1522 0.1359 0.2456 0.054 2vkr:B, 2vkr:C, 2vkr:D, 2vkr:E, 2vkr:F, 2vkr:G, 1xer:A
15 6fah:E 393 46 0.1848 0.0433 0.3696 0.11 6fah:A
16 7zc6:C 435 61 0.2283 0.0483 0.3443 0.13
17 7q4v:B 599 79 0.2500 0.0384 0.2911 0.19 8a5e:B, 7q4v:F, 7q4w:B, 7q4w:F
18 2v2k:A 104 77 0.2174 0.1923 0.2597 0.21 2v2k:B
19 6f0k:B 961 79 0.1957 0.0187 0.2278 0.21
20 1krh:A 337 23 0.1304 0.0356 0.5217 0.26 1krh:B
21 8rbq:C 477 62 0.2065 0.0398 0.3065 0.46 8ahx:C, 8rb8:C, 8rb9:C, 8rbm:C
22 1fca:A 55 42 0.1522 0.2545 0.3333 0.65 1fdn:A, 2fdn:A
23 7bkd:A 664 69 0.2283 0.0316 0.3043 0.71 7bkb:A, 7bkb:a, 7bkc:A, 7bkc:a, 7bkd:a, 7bke:A, 7bke:a
24 1hfe:L 396 73 0.2391 0.0556 0.3014 0.87 8bj7:A, 8bj8:A, 1e08:A, 1gx7:A, 1hfe:M, 6sg2:AAA
25 7yes:A 1369 40 0.1522 0.0102 0.3500 0.92 8jsl:A, 8jsm:A, 8jsn:A, 7yer:A
26 7zc6:B 202 66 0.2609 0.1188 0.3636 0.97
27 7zc6:B 202 42 0.1522 0.0693 0.3333 7.3
28 6cin:B 1169 39 0.1196 0.0094 0.2821 0.97 6cin:A, 6cin:C, 6cin:D, 6cin:E, 6cin:F, 6cio:A, 6cio:B, 6cio:C, 6cio:D, 6cio:E, 6cio:F, 6cip:A, 6cip:B, 6cip:C, 6cip:D, 6cip:E, 6cip:F, 6ciq:A, 6ciq:B, 6ciq:C
29 8a5e:A 583 18 0.0978 0.0154 0.5000 1.1 8a5e:D, 7q4v:A, 7q4v:E, 7q4w:A, 7q4w:E
30 7np8:B 620 34 0.1522 0.0226 0.4118 1.3 7np8:A, 7np8:C, 7np8:D
31 1h98:A 77 42 0.1413 0.1688 0.3095 1.4
32 7o80:Bz 595 50 0.1413 0.0218 0.2600 1.5 7a09:J, 6hcf:k1, 6hcm:k1, 3jag:jj, 3jah:jj, 3jai:jj, 5lzv:jj, 8p03:k, 8p09:k, 8scb:jj, 6yal:k, 6yam:k, 6zme:CI, 6zvj:1
33 7r55:B 325 42 0.1522 0.0431 0.3333 1.5 7qe3:BBB, 7r55:A
34 7zcc:B 326 43 0.1739 0.0491 0.3721 1.9 1vrb:A, 1vrb:B, 1vrb:D, 7zcc:A, 7zcc:C, 7zcc:D
35 6btm:B 948 73 0.1522 0.0148 0.1918 1.9
36 5t61:L 348 90 0.2717 0.0718 0.2778 2.2 5t5i:F, 5t5i:N, 5t5m:F, 5t61:F, 5t61:R, 5t61:X, 5t61:d, 5t61:j, 5t61:p, 5t61:v
37 5t61:L 348 69 0.2065 0.0546 0.2754 5.5 5t5i:F, 5t5i:N, 5t5m:F, 5t61:F, 5t61:R, 5t61:X, 5t61:d, 5t61:j, 5t61:p, 5t61:v
38 5exd:H 291 67 0.2283 0.0722 0.3134 2.2 5exd:B, 5exd:K, 5exe:E
39 6cfw:N 121 46 0.1522 0.1157 0.3043 2.4
40 1dur:A 55 19 0.0870 0.1455 0.4211 2.4
41 7rcx:A 811 20 0.1196 0.0136 0.5500 2.5
42 7rcy:A 828 20 0.1196 0.0133 0.5500 2.5 7rcw:A
43 7npa:A 618 33 0.1413 0.0210 0.3939 2.8 7npa:B, 7npa:C, 7npa:D, 7npa:E, 7npa:F, 7npa:G, 7npa:H, 7npa:I, 7npa:J, 7npa:K, 7npa:L, 7npa:M, 7npa:N, 7npa:O, 7npa:P
44 8jjr:c 86 64 0.1848 0.1977 0.2656 3.3 8jw0:c, 8jze:c, 8jzf:c
45 7plm:A 1177 18 0.0870 0.0068 0.4444 3.3 7plm:B
46 1b0p:A 1231 18 0.0870 0.0065 0.4444 3.3 1b0p:B, 2c3m:A, 2c3m:B, 2c3o:A, 2c3o:B, 2c3p:A, 2c3p:B, 2c3u:A, 2c3u:B, 2c3y:A, 2c3y:B, 2c42:A, 2c42:B, 1kek:A, 1kek:B, 2pda:A, 2pda:B, 2uza:A, 2uza:B
47 8k9e:B 951 74 0.1848 0.0179 0.2297 4.7 8k9f:B, 8x2j:B
48 1a6l:A 106 45 0.1413 0.1226 0.2889 5.4 1axq:A, 1b0t:A, 1b0v:A, 1b0v:B, 1b0v:C, 1b0v:D, 1d3w:A, 1f5b:A, 1f5c:A, 1fd2:A, 1fda:A, 1fdb:A, 1fdd:A, 2fd2:A, 5fd1:A, 6fd1:A, 6fdr:A, 7fd1:A, 7fdr:A, 1fer:A, 1ff2:A, 1frh:A, 1fri:A, 1frj:A, 1frk:A, 1frl:A, 1frm:A, 1frx:A, 1ftc:A, 1ftc:B, 1g3o:A, 1g6b:A, 1gao:A, 1gao:B, 1gao:C, 1gao:D, 1pc4:A, 1pc5:A
49 2b76:B 243 19 0.1087 0.0412 0.5263 5.5 6awf:B, 6awf:F, 2b76:N, 3cir:B, 3cir:N, 1kf6:B, 1kf6:N, 1kfy:B, 1kfy:N, 4kx6:B, 4kx6:N, 1l0v:B, 1l0v:N, 3p4p:B, 3p4p:N, 3p4q:B, 3p4q:N, 3p4r:B, 3p4r:N, 3p4s:B, 3p4s:N, 5vpn:B, 5vpn:F
50 5xwd:A 611 62 0.2391 0.0360 0.3548 5.8
51 1gth:A 1019 61 0.1739 0.0157 0.2623 5.8 8f5w:A, 8f5w:B, 8f5w:C, 8f5w:D, 8f61:A, 8f61:B, 8f61:C, 8f61:D, 8f6n:A, 8f6n:B, 8f6n:C, 8f6n:D, 1gt8:A, 1gt8:B, 1gt8:C, 1gt8:D, 1gte:A, 1gte:B, 1gte:C, 1gte:D, 1gth:B, 1gth:C, 1gth:D, 1h7w:A, 1h7w:B, 1h7w:C, 1h7w:D, 1h7x:A, 1h7x:B, 1h7x:C, 1h7x:D, 7ljs:A, 7ljs:B, 7ljs:C, 7ljs:D, 7ljt:A, 7ljt:B, 7ljt:C, 7ljt:D, 7lju:A, 7lju:C, 7lju:D, 7lju:B, 7m31:A, 7m31:B, 7m31:C, 7m31:D, 7m32:A, 7m32:B, 7m32:C, 7m32:D
52 7bkb:L 79 27 0.0978 0.1139 0.3333 6.2 7bkb:l, 7bkc:L, 7bkc:l
53 7bkb:L 79 26 0.1087 0.1266 0.3846 6.9 7bkb:l, 7bkc:L, 7bkc:l
54 8sgx:X 657 15 0.0870 0.0122 0.5333 6.3 8sgx:S, 8sgx:Z, 8sgx:V, 8sgy:V, 8sgy:B, 8sgy:S, 8sgy:Z, 8sgy:Y, 8sgz:V, 8sgz:Z, 8sgz:X, 8sgz:S, 8sgz:B, 8sgz:Y
55 3mm5:B 363 52 0.1413 0.0358 0.2500 6.4 3mm5:E, 3mm6:B, 3mm6:E, 3mm7:B, 3mm7:E, 3mm8:B, 3mm8:E, 3mm9:B, 3mm9:E, 3mma:B, 3mma:E, 3mmb:B, 3mmb:E, 3mmc:B, 3mmc:E
56 8oh5:C 1172 15 0.0870 0.0068 0.5333 7.3 8oh5:F, 8oh5:I, 8oh5:L, 8oh9:C, 8oh9:F, 8oh9:I, 8oh9:L
57 1rmg:A 422 22 0.1196 0.0261 0.5000 8.5
58 2bq1:I 294 26 0.1304 0.0408 0.4615 9.2 2bq1:J, 1r2f:A, 1r2f:B, 2r2f:A, 2r2f:B
59 4omf:G 231 35 0.1087 0.0433 0.2857 9.3 4ci0:B, 3zfs:B
60 8ahx:B 113 36 0.1413 0.1150 0.3611 9.8 8rb8:B, 8rb9:B, 8rbq:B
61 2qf7:B 1017 24 0.1196 0.0108 0.4583 9.8 3tw7:A, 3tw7:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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