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BioLiP
>protein
MRHYDCKNYINLDCEKGLCALTKGMVPIDGEGSEACPNFKPAEKCGNCKNFCNPDKYGLGTCTGLEKENWAYATCGASAC
PSYKAE

The query sequence (length=86) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2y8n:B 86 86 1.0000 1.0000 1.0000 8.49e-60 2y8n:D, 2yaj:B, 2yaj:D
2 6uy4:A 354 24 0.1279 0.0311 0.4583 0.69
3 2jsd:A 160 35 0.1395 0.0750 0.3429 2.2
4 8f9y:A 352 27 0.1395 0.0341 0.4444 6.1
5 2mze:A 250 51 0.1628 0.0560 0.2745 7.3 2ddy:A, 8jud:A, 8juf:A, 8jug:A, 8k4z:A, 1mmp:A, 1mmp:B, 1mmq:A, 1mmr:A, 2mzh:A, 2mzi:A, 5ue2:A, 5ue5:A, 7wxx:A, 2y6c:A, 2y6d:A
6 6eor:B 805 33 0.1163 0.0124 0.3030 9.4 6qzv:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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