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BioLiP
>protein
MRHPLVMGNWKLNGSRHMVHELVSNLRKELAGVAGCAVAIAPPEMYIDMAKREAEGSHIMLGAQNVDLNLSGAFTGETSA
AMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFE
GAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAKVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKAD
AFAVIVKAAEAAKQA

The query sequence (length=255) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4mva:A 255 255 1.0000 1.0000 1.0000 0.0 4mva:B
2 1aw1:A 255 238 0.6157 0.6157 0.6597 3.69e-113 1aw1:B, 1aw1:D, 1aw1:E, 1aw1:G, 1aw1:H, 1aw1:J, 1aw1:K
3 6nee:B 252 251 0.4902 0.4960 0.4980 2.13e-71 6nee:A
4 6oog:A 252 246 0.4824 0.4881 0.5000 2.51e-71
5 8w06:B 251 246 0.4784 0.4861 0.4959 2.14e-70 8v09:A, 8v0a:B, 8w06:A, 8w06:C, 8w06:D, 8w06:E, 8w06:F, 8w06:G, 8w06:H
6 6ooi:C 255 251 0.4745 0.4745 0.4821 1.49e-66 6ooi:A, 6ooi:B, 6ooi:D, 6ooi:E, 6ooi:F, 6ooi:G, 6ooi:H
7 4y96:A 250 251 0.4667 0.4760 0.4741 5.08e-64 4y96:B
8 3uwv:A 255 256 0.4275 0.4275 0.4258 3.08e-63 3uwu:A, 3uwu:B, 3uwv:B, 3uww:A, 3uww:B, 3uwz:A, 3uwz:B
9 5zfx:B 248 241 0.4471 0.4597 0.4730 7.14e-63
10 4ff7:A 247 246 0.4353 0.4494 0.4512 7.39e-63 4ff7:B, 7tim:A, 7tim:B, 2ypi:A, 2ypi:B, 3ypi:A, 3ypi:B
11 1amk:A 250 245 0.4118 0.4200 0.4286 1.95e-62 7abx:A, 7az3:A, 7az4:A, 7az9:A, 7aza:A, 1if2:A, 1n55:A, 1qds:A, 2vxn:A, 2y61:A, 2y62:A, 2y63:A
12 1ci1:B 249 250 0.4275 0.4378 0.4360 2.85e-61
13 1hti:B 248 250 0.4392 0.4516 0.4480 6.72e-61 4owg:A, 4owg:B, 4poc:B, 4pod:B, 1r2r:B, 7rde:B, 7t0q:A, 6up5:B, 6upf:A, 6upf:B, 7uxv:A, 7uxv:B
14 1btm:A 251 248 0.3882 0.3944 0.3992 2.08e-60 1btm:B, 2btm:A, 2btm:B
15 6bve:A 242 248 0.4039 0.4256 0.4153 7.41e-60 6bve:B
16 1ssg:A 247 246 0.4353 0.4494 0.4512 4.55e-58 1ssg:B, 1su5:A, 1su5:B, 1sw0:A, 1sw0:B, 1sw3:A, 1sw3:B, 1sw7:A, 1sw7:B, 1tpb:1, 1tpb:2, 1tpc:1, 1tpc:2, 1tph:1, 1tph:2, 1tpu:A, 1tpu:B, 1tpv:A, 1tpv:B, 1tpw:A, 1tpw:B
17 5eyw:A 244 248 0.4157 0.4344 0.4274 6.04e-57 5eyw:B
18 1ag1:T 249 249 0.4235 0.4337 0.4337 5.19e-56 5i3h:B, 5i3i:A, 5i3i:B, 5i3i:C, 5i3i:D, 5i3k:B, 5i3k:C, 5i3k:D, 1iig:B, 2j27:A, 2j27:B, 1kv5:A, 1kv5:B, 4tim:B, 6tim:B, 1trd:B, 1tsi:A, 2v2c:A
19 4bi7:A 256 253 0.4196 0.4180 0.4229 2.16e-54 4bi6:A, 3pf3:A
20 5gzp:A 246 252 0.3922 0.4065 0.3968 1.53e-53 5gv4:A, 5gzp:B, 1lyx:A, 1lzo:B, 1lzo:D, 1m7p:A, 1m7p:B, 1o5x:A, 1o5x:B, 3pvf:A, 1woa:A, 1woa:B, 1woa:C, 1woa:D, 1wob:A, 1wob:B, 1wob:C, 1wob:D
21 3tao:A 256 249 0.4118 0.4102 0.4217 1.26e-52
22 2y6z:A 256 254 0.4118 0.4102 0.4134 5.46e-50 1ml1:A, 1ml1:C, 1ml1:E, 1ml1:G, 1ml1:I, 1ml1:K, 4pc8:A, 1tti:A, 1ttj:A, 2v2h:A, 2v2h:B, 2v2h:C, 2vek:B, 2vel:A, 2vel:B, 2vem:A, 2vem:B, 2wsr:A, 2x1r:A, 2x1r:B, 2x1s:A, 2x1s:B, 2x1t:B
23 4y90:A 244 231 0.3686 0.3852 0.4069 3.55e-46 4y90:B, 4y90:C, 4y90:D
24 2jgq:A 231 191 0.2588 0.2857 0.3455 4.15e-31 2jgq:B
25 5csr:C 220 129 0.1412 0.1636 0.2791 4.04e-04 5csr:A, 5csr:B, 5csr:D, 5css:A, 5css:B, 5css:C, 5css:D
26 1w0m:A 225 253 0.2353 0.2667 0.2372 0.001 1w0m:B, 1w0m:C, 1w0m:D, 1w0m:E, 1w0m:F, 1w0m:G, 1w0m:H
27 1hg3:A 224 206 0.1804 0.2054 0.2233 0.044 1hg3:B, 1hg3:C, 1hg3:D, 1hg3:E, 1hg3:F, 1hg3:G, 1hg3:H
28 2ff4:A 379 230 0.2196 0.1478 0.2435 0.29 2ff4:B
29 4k3v:B 278 105 0.0863 0.0791 0.2095 0.54 5hdq:A, 4nno:A
30 5zb2:A 402 65 0.0980 0.0622 0.3846 1.4
31 4k3v:A 253 50 0.0549 0.0553 0.2800 2.7
32 7squ:A 542 43 0.0667 0.0314 0.3953 3.4 7squ:D, 7squ:G, 7squ:J, 7sqv:A
33 4b10:A 385 29 0.0471 0.0312 0.4138 4.1 4a95:A, 4a95:B, 4a95:C, 4b10:B, 4b10:C, 4b11:A, 4b11:B, 4b11:C, 4b12:A, 4b12:B, 4b12:C, 4b13:A, 4b13:B, 4b13:C, 4b14:A, 4b14:B, 4b14:C, 6b1l:A, 4bbh:A, 4bbh:B, 4bbh:C, 4c68:A, 4c68:B, 4c68:C, 4cae:A, 4cae:B, 4cae:C, 4caf:A, 4caf:B, 4caf:C, 8fbq:A, 5g1z:A, 5g1z:B, 5g1z:C, 5g22:A, 5g22:B, 5g22:C, 6may:A, 6may:B, 6may:C, 6maz:A, 6maz:B, 6maz:C, 6mb0:A, 6mb0:B, 6mb0:C, 6mb1:A, 6mb1:B, 6mb1:C, 6nxg:A, 6nxg:B, 6nxg:C, 5o48:A, 5o48:B, 5o48:C, 5o4v:A, 5o4v:B, 5o4v:C, 6tw5:AAA, 6tw5:BBB, 6tw5:CCC, 6tw6:AAA, 6tw6:BBB, 6tw6:CCC, 4ufv:A, 4ufv:B, 4ufv:C, 4ufw:A, 4ufw:B, 4ufw:C, 4ufx:A, 4ufx:B, 4ufx:C, 5v0w:A, 5v0w:B, 5v0w:C, 5v0x:A, 5v0x:B, 5v0x:C, 8vka:A, 8vka:B, 8vka:C, 8vkb:A, 8vkb:B, 8vkb:C, 2ync:A, 2ync:B, 2ync:C, 2ynd:A, 2ynd:B, 2ynd:C, 2yne:A, 2yne:B, 2yne:C
34 8r2h:B 701 33 0.0549 0.0200 0.4242 4.3 8r2h:A
35 6m29:A 122 41 0.0588 0.1230 0.3659 5.2 8i57:A, 8i57:B, 8i58:A, 8i58:B, 6m27:A, 6m27:B, 6m28:A, 6m28:B, 6m29:B, 6m2e:A, 6m2e:B, 6m2f:A, 6m2f:B, 6m2g:A, 6m2g:B, 6m2h:A, 6m2h:B
36 7e7m:C 284 100 0.0902 0.0810 0.2300 6.1 7e7m:A, 7e7m:B, 7e7m:D
37 6vz6:A 77 56 0.0627 0.2078 0.2857 7.0
38 5e9f:D 453 44 0.0667 0.0375 0.3864 9.0
39 5e9f:B 501 44 0.0667 0.0339 0.3864 9.1 5e9f:C, 5e9g:C
40 4gve:A 197 35 0.0471 0.0609 0.3429 9.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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