Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MRFCPKCGSFLKVKGNKMVCSKCGYSDHDVEKVILKENVAHENDKTIIADGETIEGRVAISLCPRCGSVRAILLNKKKRL
YRCMTCNFVYNI

The query sequence (length=92) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7oqy:Y 92 92 1.0000 1.0000 1.0000 1.98e-64
2 5jb3:Y 50 28 0.1304 0.2400 0.4286 0.005 5jbh:Y, 6sw9:Y, 6swc:Y, 6swe:Y, 4v4n:BY, 4v6u:AY, 7zag:Y, 7zah:Y, 7zai:Y, 7zhg:Y
3 7oba:I 105 100 0.2826 0.2476 0.2600 0.005 7ob9:I, 7obb:I
4 2k4x:A 55 28 0.1304 0.2182 0.4286 0.015
5 8aa2:G 435 55 0.1957 0.0414 0.3273 0.12
6 6tmf:Z 50 28 0.1087 0.2000 0.3571 0.22
7 5ijl:A 943 51 0.1739 0.0170 0.3137 1.0
8 8ppt:B 1191 51 0.1739 0.0134 0.3137 1.1 8ppu:B, 8ppv:B, 6t8h:B
9 2mbv:A 96 35 0.1522 0.1458 0.4000 1.3
10 2dcu:A 407 70 0.1739 0.0393 0.2286 1.4 2d74:A, 1kjz:A, 1kk0:A, 1kk1:A, 1kk2:A, 1kk3:A
11 7rwa:M 379 31 0.1522 0.0369 0.4516 1.4 7rwa:m
12 1h6e:A 219 31 0.1522 0.0639 0.4516 1.5
13 6o3p:B 320 23 0.1196 0.0344 0.4783 1.6
14 8x6f:D 1176 18 0.0870 0.0068 0.4444 3.4 8x6g:D
15 2wv4:A 201 48 0.1413 0.0647 0.2708 3.8 2wv4:B, 2wv5:A, 2wv5:B, 2wv5:C, 2wv5:D
16 4s2a:A 594 32 0.1087 0.0168 0.3125 4.1 3epm:A, 3epm:B, 3epn:A, 3epn:B, 3epo:A, 3epo:B
17 6knb:B 1120 51 0.1630 0.0134 0.2941 4.8 6knc:B
18 8hky:S27A 54 27 0.1087 0.1852 0.3704 5.1 8hkz:S27A, 8hl1:S27A, 8hl2:S27A, 8hl3:S27A, 8hl4:S27A, 8hl5:S27A, 8wkp:S27A, 8wq2:S27A, 8wq4:S27A
19 2ds5:B 44 25 0.1196 0.2500 0.4400 6.2 2ds5:A, 2ds6:A, 2ds6:B, 2ds7:A, 2ds8:B, 2ds8:A, 1ovx:A, 1ovx:B
20 7d59:I 108 31 0.1087 0.0926 0.3226 6.7 7a6h:I, 7ae1:I, 7ae3:I, 7aea:I, 7dn3:I, 7du2:I, 7fji:I, 7fjj:I, 8ity:I, 8iue:I, 8iuh:I
21 6j9f:D 1215 18 0.0870 0.0066 0.4444 7.2 6j9e:D
22 6wmp:D 1159 36 0.1196 0.0095 0.3056 9.1 6wmr:D, 6wmt:D
23 4xnw:C 350 23 0.1087 0.0286 0.4348 9.4 4xnv:A, 4xnw:A
24 6scx:A 328 23 0.1087 0.0305 0.4348 9.7 6o3p:A, 6scx:B, 6scx:C

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218