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BioLiP
>protein
MRDLKTYLSVAPVLSTLWFGALAGLLIEINRFFPDALTFP

The query sequence (length=40) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8bcv:J 43 40 0.9250 0.8605 0.9250 5.91e-22 7ew6:J, 7ewk:J, 7f9o:J, 7f9o:m, 8j6z:J, 8j7a:J, 8j7b:J, 3lw5:J, 2o01:J, 7wfd:AJ, 7wfe:BJ, 7wg5:AJ, 7wg5:BJ, 8wgh:J, 2wsc:J, 2wse:J, 2wsf:J, 5zji:J
2 5l8r:J 42 40 0.9500 0.9048 0.9500 6.06e-22 7dkz:J, 6ly5:j, 4rku:J, 4xk8:J, 4xk8:j, 4y28:J, 6yac:J, 6yez:J, 6zoo:J, 6zxs:J
3 8htu:J 41 40 0.8250 0.8049 0.8250 6.52e-19 7ksq:J, 7kux:J, 6l35:J, 7xqp:J
4 7yca:J 41 40 0.6500 0.6341 0.6500 1.56e-15
5 7d0j:J 41 39 0.6500 0.6341 0.6667 2.46e-14 7bgi:J, 7blx:J, 7dz7:J, 7dz8:J, 8h2u:J, 6ijj:J, 6ijo:J, 6jo5:J, 6jo6:J, 7r3k:J, 7wyi:J, 7wzn:J, 7zq9:J, 7zqc:J, 7zqd:J, 7zqd:J2
6 7a4p:J 41 37 0.6500 0.6341 0.7027 1.31e-12 6zzx:J, 6zzy:J
7 6kif:J 41 40 0.6250 0.6098 0.6250 3.10e-12 6kif:T, 6kif:l, 6kig:J, 6kig:T, 6kig:l
8 8cmo:J 40 39 0.6000 0.6000 0.6154 3.96e-12
9 6igz:J 41 39 0.5500 0.5366 0.5641 8.51e-12
10 7blz:J 38 35 0.5750 0.6053 0.6571 2.58e-11 6fos:J, 8wey:J, 5zgb:J, 5zgh:J
11 6l4u:J 41 37 0.5500 0.5366 0.5946 6.57e-11
12 6qph:J 41 39 0.6000 0.5854 0.6154 1.67e-10 6rhz:J, 6sl5:J, 6yxr:J
13 4fe1:J 41 40 0.5500 0.5366 0.5500 1.93e-10 7fix:J1, 7fix:J2, 7fix:J3, 1jb0:J, 6k33:aJ, 6k33:bJ, 6k33:cJ, 7m75:J, 7m76:J, 7m78:J, 3pcq:J, 6pfy:J, 6pfy:S, 6pfy:f, 6pgk:J, 6pgk:S, 6pgk:f, 6tra:J, 6trc:J, 6trc:j, 6trc:8, 6trd:J, 6trd:j, 6trd:8, 5zf0:J1, 5zf0:J2, 5zf0:J3, 5zf0:J4, 5zf0:J6, 5zf0:J5
14 8wm6:J 42 34 0.5250 0.5000 0.6176 5.08e-09 8wmj:J, 8wmv:J, 8wmw:J, 7y7b:J, 7y8a:J
15 7dr0:J 37 34 0.5750 0.6216 0.6765 2.06e-08 7dr1:J, 7dr2:aJ, 7dr2:bJ, 7dr2:cJ, 7dr2:dJ
16 6k61:J 45 37 0.5000 0.4444 0.5405 3.64e-08 6jeo:aJ, 6jeo:bJ, 6jeo:cJ, 6jeo:dJ, 6k61:j, 6tcl:J1, 6tcl:J2, 6tcl:J, 6tcl:JJ, 7y3f:J
17 7y5e:JN 38 33 0.5000 0.5263 0.6061 8.30e-08 7y5e:J2, 7y7a:J7, 7y7a:Jo
18 7coy:aJ 35 34 0.4500 0.5143 0.5294 9.30e-08 7coy:bJ, 7coy:cJ
19 6vpv:J 39 39 0.5500 0.5641 0.5641 2.10e-07 6vpv:j, 6vpv:8
20 4l6v:F 125 40 0.4750 0.1520 0.4750 6.48e-05 8am5:j, 8asl:j, 8asp:j, 6hqb:J, 4kt0:J, 4l6v:f, 4l6v:6, 6nwa:J, 6nwa:j, 6nwa:S, 5oy0:J, 5oy0:j, 5oy0:7, 7umh:J, 7umh:S, 7umh:j, 6uzv:J, 6uzv:j, 6uzv:7
21 7s3d:J 41 34 0.3500 0.3415 0.4118 1.62e-04 7s3d:S, 7s3d:j
22 7qco:q 37 34 0.4000 0.4324 0.4706 0.046 7qco:j
23 8jw0:j 70 36 0.4500 0.2571 0.5000 0.066
24 8jjr:j 99 39 0.4500 0.1818 0.4615 0.14
25 8jze:j 98 36 0.3750 0.1531 0.4167 0.14 8jzf:j
26 7sf2:A 586 29 0.2750 0.0188 0.3793 7.2 7sf2:B, 7sf2:C, 7sf2:D, 7sf2:E, 7sf2:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218