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BioLiP Library
>protein
MRDFKTYLSVAPVLSTLWFGSLAGLLIEINRFFPDALTFPFF

The query sequence (length=42) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8bcv:J 43 42 0.9048 0.8837 0.9048 1.11e-22 7ew6:J, 7ewk:J, 7f9o:J, 7f9o:m, 8j6z:J, 8j7a:J, 8j7b:J, 3lw5:J, 2o01:J, 7wfd:AJ, 7wfe:BJ, 7wg5:AJ, 7wg5:BJ, 8wgh:J, 2wsc:J, 2wse:J, 2wsf:J, 5zji:J
2 5l8r:J 42 42 0.9048 0.9048 0.9048 2.66e-22 7dkz:J, 6ly5:j, 4rku:J, 4xk8:J, 4xk8:j, 4y28:J, 6yac:J, 6yez:J, 6zoo:J, 6zxs:J
3 8htu:J 41 41 0.7857 0.8049 0.8049 1.15e-18 7ksq:J, 7kux:J, 6l35:J, 7xqp:J
4 7yca:J 41 40 0.6429 0.6585 0.6750 5.03e-16
5 7d0j:J 41 41 0.6667 0.6829 0.6829 2.50e-15 7bgi:J, 7blx:J, 7dz7:J, 7dz8:J, 8h2u:J, 6ijj:J, 6ijo:J, 6jo5:J, 6jo6:J, 7r3k:J, 7wyi:J, 7wzn:J, 7zq9:J, 7zqc:J, 7zqd:J, 7zqd:J2
6 7a4p:J 41 41 0.6667 0.6829 0.6829 1.94e-13 6zzx:J, 6zzy:J
7 8cmo:J 40 39 0.5952 0.6250 0.6410 1.42e-12
8 6qph:J 41 41 0.6190 0.6341 0.6341 1.33e-11 6rhz:J, 6sl5:J, 6yxr:J
9 6l4u:J 41 37 0.5476 0.5610 0.6216 1.96e-11
10 6igz:J 41 41 0.5238 0.5366 0.5366 1.96e-11
11 6kif:J 41 40 0.5714 0.5854 0.6000 2.50e-11 6kif:T, 6kif:l, 6kig:J, 6kig:T, 6kig:l
12 4fe1:J 41 40 0.5476 0.5610 0.5750 4.52e-11 7fix:J1, 7fix:J2, 7fix:J3, 1jb0:J, 6k33:aJ, 6k33:bJ, 6k33:cJ, 7m75:J, 7m76:J, 7m78:J, 3pcq:J, 6pfy:J, 6pfy:S, 6pfy:f, 6pgk:J, 6pgk:S, 6pgk:f, 6tra:J, 6trc:J, 6trc:j, 6trc:8, 6trd:J, 6trd:j, 6trd:8, 5zf0:J1, 5zf0:J2, 5zf0:J3, 5zf0:J4, 5zf0:J6, 5zf0:J5
13 7blz:J 38 35 0.5238 0.5789 0.6286 1.38e-10 6fos:J, 8wey:J, 5zgb:J, 5zgh:J
14 8wm6:J 42 38 0.5238 0.5238 0.5789 3.69e-09 8wmj:J, 8wmv:J, 8wmw:J, 7y7b:J, 7y8a:J
15 7dr0:J 37 37 0.5714 0.6486 0.6486 4.58e-09 7dr1:J, 7dr2:aJ, 7dr2:bJ, 7dr2:cJ, 7dr2:dJ
16 7y5e:JN 38 38 0.5000 0.5526 0.5526 2.50e-08 7y5e:J2, 7y7a:J7, 7y7a:Jo
17 6k61:J 45 34 0.4524 0.4222 0.5588 1.02e-07 6jeo:aJ, 6jeo:bJ, 6jeo:cJ, 6jeo:dJ, 6k61:j, 6tcl:J1, 6tcl:J2, 6tcl:J, 6tcl:JJ, 7y3f:J
18 7coy:aJ 35 34 0.4286 0.5143 0.5294 3.25e-07 7coy:bJ, 7coy:cJ
19 6vpv:J 39 39 0.5000 0.5385 0.5385 1.14e-06 6vpv:j, 6vpv:8
20 7s3d:J 41 34 0.3810 0.3902 0.4706 7.81e-06 7s3d:S, 7s3d:j
21 4l6v:F 125 40 0.4286 0.1440 0.4500 4.09e-04 8am5:j, 8asl:j, 8asp:j, 6hqb:J, 4kt0:J, 4l6v:f, 4l6v:6, 6nwa:J, 6nwa:j, 6nwa:S, 5oy0:J, 5oy0:j, 5oy0:7, 7umh:J, 7umh:S, 7umh:j, 6uzv:J, 6uzv:j, 6uzv:7
22 7qco:q 37 31 0.3571 0.4054 0.4839 0.077 7qco:j
23 8jw0:j 70 35 0.4048 0.2429 0.4857 0.63
24 8jze:j 98 14 0.2619 0.1122 0.7857 0.72 8jzf:j
25 8jjr:j 99 39 0.4286 0.1818 0.4615 0.74
26 2nya:A 791 37 0.2857 0.0152 0.3243 1.1 2nya:F
27 7ktr:A 3042 38 0.3095 0.0043 0.3421 4.1
28 8xvg:L 3485 38 0.3095 0.0037 0.3421 4.3 8xvv:L
29 7sf2:A 586 29 0.2619 0.0188 0.3793 7.2 7sf2:B, 7sf2:C, 7sf2:D, 7sf2:E, 7sf2:F
30 4v1t:B 753 16 0.2143 0.0120 0.5625 7.6 4v1t:A, 4v1u:A, 4v1u:B, 4v1v:A, 4v1v:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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