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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MRCLALDIGGTKIASAIVTDGKIEQRQQIATPQADAANAMHDTLANILALYAGQFDYVAVASTGIINHGVLTALNPKNLG
GLAEFPLKESIARHTDKPIGLLNDVQAAACAEYKDEDKNAVQNFVFITVSTGVGGGIILERRLLTEPNGVAGHIGHTLAD
PNGPVCGCGRVGCVEAVAAGRAIEAVSSQWNPPCTPKQAFELFRKNDEKATALIQRSASAIANLIADLVIGLDVQKVVVG
GSVGLAEGYLPLVKQYLNTMPHFYHCTVEQARHGQDAGLLGAAWWVADCLKQG

The query sequence (length=293) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6jdh:A 293 293 1.0000 1.0000 1.0000 0.0 6jda:A, 6jdh:B, 6jdo:A, 6jdo:B
2 6jdb:A 290 290 0.7099 0.7172 0.7172 3.48e-153
3 6jdc:A 269 290 0.6621 0.7212 0.6690 1.12e-136
4 2aa4:A 289 277 0.4710 0.4775 0.4982 7.47e-75 2aa4:B
5 3vov:B 298 292 0.3208 0.3154 0.3219 1.51e-30 3vov:A, 3vov:C, 3vov:D
6 2qm1:B 325 311 0.3208 0.2892 0.3023 3.84e-21 2qm1:A, 2qm1:C, 2qm1:D
7 7p7w:BBB 306 304 0.2867 0.2745 0.2763 9.82e-21 7p7i:AAA, 7p7i:BBB, 7p7w:AAA, 7p9l:AAA, 7p9l:BBB, 7p9p:AAA, 7p9p:BBB, 7p9y:AAA, 7p9y:BBB, 7pa1:AAA, 7pa1:BBB
8 4db3:A 311 308 0.2833 0.2669 0.2695 8.36e-20
9 1z05:A 396 299 0.2765 0.2045 0.2709 1.34e-18
10 3vgk:B 312 318 0.3345 0.3141 0.3082 2.78e-17 3vgk:A, 3vgk:C, 3vgk:D, 3vgk:E, 3vgk:F, 3vgk:G, 3vgk:H, 3vgl:A, 3vgm:A
11 1xc3:A 295 301 0.2730 0.2712 0.2658 8.14e-14 3lm9:A, 3ohr:A
12 2ap1:A 305 301 0.2560 0.2459 0.2492 1.43e-13
13 1z6r:A 382 224 0.1945 0.1492 0.2545 2.63e-13 3bp8:A, 3bp8:B, 1z6r:B, 1z6r:C, 1z6r:D
14 5f7q:E 396 206 0.1741 0.1288 0.2476 9.76e-10 5f7p:E, 5f7p:A, 5f7q:C, 5f7q:J, 5f7q:L, 5f7r:E, 5f7r:A
15 3eo3:A 288 273 0.2355 0.2396 0.2527 1.73e-08 3eo3:B, 3eo3:C
16 2yhw:A 309 196 0.1877 0.1780 0.2806 9.94e-08 2yhy:A, 2yi1:A
17 2gup:A 289 161 0.1536 0.1557 0.2795 1.67e-05
18 1woq:A 253 98 0.0990 0.1146 0.2959 0.048 1woq:B
19 8pvr:B 509 77 0.0887 0.0511 0.3377 1.3 8pvr:A
20 6zz6:B 423 43 0.0546 0.0378 0.3721 3.7
21 4ux3:A 436 43 0.0546 0.0367 0.3721 4.7
22 8ioy:A 816 41 0.0512 0.0184 0.3659 7.6
23 3nhi:A 295 32 0.0444 0.0441 0.4062 8.8 3nht:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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