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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MRCIGISNRDFVEGVSGGSWVDIVLEHGSCVTTMAKNKPTLDFELIKTEAKQPATLRKYCIEAKLTNTTTESRCPTQGEP
TLNEEQDKRFVCKHSMVDRGWGNGCGLFGKGGIVTCAMFTCKKNMEGKIVQPENLEYTVVITPHSGEEHAVGNDTGKHGK
EVKITPQSSITEAELTGYGTVTMECSPRTGLDFNEMVLLQMKDKAWLVHRQWFLDLPLPWLPGADTQGSNWIQKETLVTF
KNPHAKKQDVVVLGSQEGAMHTALTGATEIQMSSGNLLFTGHLKCRLRMDKLQLKGMSYSMCTGKFKVVKEIAETQHGTI
VIRVQYEGDGSPCKIPFEIMDLEKRHVLGRLITVNPIVTEKDSPVNIEAEPPFGDSYIIIGVEPGQLKLNWFKK

The query sequence (length=394) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7kv8:A 493 394 0.9721 0.7769 0.9721 0.0 7kv8:B, 7kv8:C, 5n09:A, 5n09:B, 5n0a:A, 5n0a:B, 1oan:A, 1oan:B, 1oke:A, 1oke:B, 4ut6:A, 4ut6:B, 4uta:A, 4utb:A, 4utb:B, 4utc:A, 4utc:B
2 7a3r:A 379 394 0.6675 0.6939 0.6675 0.0
3 5lcv:B 405 403 0.5508 0.5358 0.5385 1.61e-160 7a3n:A, 5lbv:B
4 7lcg:E 496 403 0.4746 0.3770 0.4640 3.19e-126 7lcg:A, 7lcg:C, 7lch:A, 7lch:C, 7lch:E
5 7z51:A 494 404 0.3858 0.3077 0.3762 2.84e-79 7z51:B, 7z51:C
6 6lc8:B 318 79 0.0533 0.0660 0.2658 0.12 6lc9:B
7 6lc8:A 357 73 0.0508 0.0560 0.2740 2.2 6lc9:A
8 6axe:A 729 53 0.0406 0.0219 0.3019 3.4 6axe:B
9 6ywe:G 74 28 0.0254 0.1351 0.3571 8.7 6yws:G, 6ywx:G, 6ywy:G
10 6m6a:M 459 46 0.0381 0.0327 0.3261 9.5 6m6b:M

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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