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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MRAVNWNKKEDDFSLMFWKQNIAQFWTEEEIAVSSDKNTWVQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENL
QAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGIITSYYRRLLKPEVTKKELYMAMVASVFL
ESYLFYSGFFYPLYLAGQGKLTASGEIINLIIRDESIHGVFVGILAQQIFAELSAEEQQEVQKETQELLMELYEIEMAYT
EEIYTSIGLVEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIVLNGLRTDTKNHDFFSV

The query sequence (length=299) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4bmq:A 300 299 1.0000 0.9967 1.0000 0.0 4bmo:A, 4bmp:A, 4bmr:A, 4bmr:B, 4bmt:A, 4bmt:B, 4bmu:A, 4bmu:B, 6qo7:A, 6qo7:B, 6qo8:A, 6qo8:B, 6qo9:A, 6qo9:B, 6qob:A, 6qob:B, 6tqv:A, 6tqv:B, 6tqw:A, 6tqw:B, 6tqy:A, 6tqy:B, 6tqz:A, 6tqz:B, 7z3d:A, 7z3e:A
2 4dr0:B 291 288 0.5485 0.5636 0.5694 7.14e-115 4dr0:A
3 4n83:A 285 290 0.4415 0.4632 0.4552 1.34e-80 4n83:B, 4n83:C, 4n83:D, 4n83:E, 4n83:F, 4n83:G, 4n83:H
4 1oqu:C 302 292 0.4381 0.4338 0.4486 2.52e-79 3dhz:A, 3dhz:B, 1kgn:A, 1kgn:B, 1kgn:C, 1kgn:D, 1kgo:A, 1kgo:B, 1kgo:C, 1kgo:D, 1kgp:A, 1kgp:B, 1kgp:C, 1kgp:D, 3mjo:A, 3mjo:B, 1oqu:A, 1oqu:B, 1oqu:D
5 2bq1:I 294 297 0.4247 0.4320 0.4276 1.46e-77 2bq1:J, 1r2f:A, 1r2f:B, 2r2f:A, 2r2f:B
6 3n37:A 284 289 0.3980 0.4190 0.4118 7.31e-73 3n38:A, 3n39:B, 3n39:A, 3n3a:B, 3n3a:A, 3n3b:B, 3n3b:A
7 1uzr:B 288 287 0.4013 0.4167 0.4181 1.17e-72 1uzr:A, 1uzr:C
8 6gp2:A 318 302 0.3779 0.3553 0.3742 1.26e-56 8bt4:A, 8bt4:B, 6gp2:B, 6gp3:A, 6gp3:B
9 7mms:D 320 303 0.3779 0.3531 0.3729 1.10e-55 6ebo:A, 6ebo:B, 6ebo:C, 6ebo:D, 6ebp:A, 6ebp:B, 6ebp:C, 6ebp:D, 6ebz:A, 6ebz:B, 6ebz:C, 6ebz:D, 7mmp:A, 7mmp:C, 7mmp:B, 7mmq:A, 7mmq:C, 7mmq:B, 7mmr:A, 7mmr:B, 7mmr:C, 7mmr:D, 7mms:A, 7mms:B, 7mms:C, 7mmw:A, 7mmw:B
10 6zjk:A 317 285 0.2809 0.2650 0.2947 1.57e-30 6zjk:C, 6zjk:D, 6zjk:B
11 2rcc:C 311 289 0.3010 0.2894 0.3114 9.61e-29 2rcc:B
12 6y2n:A 306 269 0.2441 0.2386 0.2714 7.31e-17
13 6w4x:C 375 306 0.2542 0.2027 0.2484 2.99e-16 7ai8:A, 7ai9:A, 2alx:A, 1av8:A, 1av8:B, 2av8:A, 2av8:B, 7bet:A, 1biq:A, 1biq:B, 5ci0:A, 5ci1:A, 5ci2:A, 5ci3:A, 5ci4:A, 5cns:E, 5cns:F, 5cns:G, 5cns:H, 5cnt:E, 5cnt:F, 5cnt:G, 5cnt:H, 5cnu:E, 5cnu:F, 5cnu:G, 5cnu:H, 5cnv:E, 5cnv:F, 5cnv:G, 5cnv:H, 4erm:E, 4erm:F, 4erm:G, 4erm:H, 4erp:E, 4erp:F, 4erp:G, 4erp:H, 1jpr:A, 1jpr:B, 1jqc:A, 1jqc:B, 1mrr:A, 1mrr:B, 1mxr:A, 1mxr:B, 1pfr:A, 1pfr:B, 1pim:A, 1pim:B, 1piu:A, 1piu:B, 1piy:A, 1piy:B, 1piz:A, 1piz:B, 1pj0:A, 1pj0:B, 1pj1:A, 1pj1:B, 1pm2:A, 1pm2:B, 1r65:A, 1r65:B, 1rib:A, 1rib:B, 1rnr:A, 1rnr:B, 1rsr:A, 1rsr:B, 1rsv:A, 1rsv:B, 3uus:E, 3uus:F, 3uus:G, 3uus:H, 6w4x:D, 1xik:A, 1xik:B, 2xof:A, 2xof:B, 1yfd:A, 1yfd:B
14 7aik:A 321 274 0.2542 0.2368 0.2774 2.23e-15 7ail:A, 7q39:AAA, 7q3c:AAA
15 7mdi:E 353 309 0.2441 0.2068 0.2362 2.91e-15 7mdi:G, 7mdi:F, 7mdi:H
16 4d8f:B 334 272 0.2207 0.1976 0.2426 1.04e-11 2ani:A, 4d8f:A, 4d8f:C, 4d8f:D, 4d8g:A, 4d8g:B, 4d8g:C, 4d8g:D, 4m1i:A, 4m1i:B, 4m1i:C, 4m1i:D, 1syy:A
17 2o1z:A 288 216 0.1940 0.2014 0.2685 6.51e-10 2o1z:B, 2p1i:A, 2p1i:B, 2p1i:C, 2p1i:D, 2p1i:E, 2p1i:F, 2p1i:G, 2p1i:H
18 1h0n:A 288 271 0.2140 0.2222 0.2362 9.54e-10 1h0o:A, 2uw2:A, 3vpm:A, 3vpm:B, 3vpn:A, 3vpn:B, 3vpo:A, 3vpo:B, 1w68:A, 1w69:A, 1xsm:A
19 3hf1:B 286 273 0.2107 0.2203 0.2308 1.34e-07 3hf1:A, 2vux:A
20 1jk0:A 334 260 0.2140 0.1916 0.2462 3.66e-07
21 2vux:B 255 274 0.2140 0.2510 0.2336 2.44e-06
22 8shj:A 334 70 0.0669 0.0599 0.2857 1.3 8shj:B, 8t55:A, 8t55:B
23 1i9d:A 138 82 0.0702 0.1522 0.2561 1.5 1j9b:A, 1jzw:A, 1sjz:A, 1sk0:A
24 4v58:G 2060 140 0.1037 0.0150 0.2214 1.9 4v58:H, 4v58:I, 4v58:J, 4v58:K, 4v58:L, 4v59:G, 4v59:H, 4v59:I, 4v59:J, 4v59:K, 4v59:L
25 2jcd:A 315 99 0.0803 0.0762 0.2424 2.2 3chh:A, 3chh:B, 3chi:A, 3chi:B, 3cht:A, 3cht:B, 3chu:A, 3chu:B, 2jcd:B
26 5olk:A 395 200 0.1405 0.1063 0.2100 5.3 5olk:B, 5olk:C, 5olk:D, 6sf5:A, 6sf5:B
27 6qrz:A 274 44 0.0468 0.0511 0.3182 5.9
28 6xo2:A 294 36 0.0401 0.0408 0.3333 7.3 7mfj:AAA, 6pmu:A, 6pmu:B
29 3mzs:A 470 171 0.1271 0.0809 0.2222 9.8 3mzs:B, 3mzs:C, 3mzs:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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