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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MRAAVVYKTDGHVKRIEEALKRLEVEVELFNQPSEELENFDFIVSVGGDGTILRILQKLKRCPPIFGINTGRVGLLTHAS
PENFEVELKKAVEKFEVERFPRVSCSAMPDVLALNEIAVLSRKPAKMIDVALRVDGVEVDRIRCDGFIVATQIGSTGYAF
SAGGPVVEPYLECFILIPIAPFRFGWKPYVVSMERKIEVIAEKAIVVADGQKSVDFDGEITIEKSEFPAVFFKNEKRFRN
LFGKVRSIG

The query sequence (length=249) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1suw:A 249 249 1.0000 1.0000 1.0000 0.0 1suw:D, 1suw:B, 1suw:C, 1z0s:A, 1z0s:D, 1z0s:B, 1z0s:C, 1z0u:A, 1z0u:B, 1z0z:A, 1z0z:D, 1z0z:B, 1z0z:C
2 7mh7:A 290 188 0.2450 0.2103 0.3245 5.09e-26 7qvs:A, 7qvs:B
3 1y3i:A 231 178 0.2329 0.2511 0.3258 8.13e-20 1y3i:B
4 3afo:A 360 186 0.2048 0.1417 0.2742 8.63e-16 3afo:B
5 2i2a:A 264 152 0.1767 0.1667 0.2895 3.19e-10 8a9v:A, 8b47:A, 8b47:B, 5dhp:A, 5dhp:C, 5dhp:B, 5dhp:D, 5dhq:A, 5dhq:C, 5dhq:B, 5dhq:D, 5dhr:A, 5dhr:C, 5dhr:B, 5dhr:D, 5dhs:A, 5dhs:C, 5dhs:B, 5dhs:D, 5dht:A, 5dht:C, 5dht:B, 5dht:D, 5dhu:A, 5dhu:C, 5dhu:B, 5dhu:D, 4dy6:A, 5ejh:A, 5eji:A, 2i29:A, 2i2b:A, 2i2c:A, 2i2d:A, 2i2f:A, 2q5f:A, 6rbo:A, 6rbp:A, 6rbq:A, 6rbr:A, 6rbs:A, 6rbt:A, 6rbu:A, 6rbv:A, 6rbw:A, 6rbx:A, 6rby:A, 6rbz:A, 6rc0:A, 6rc1:A, 6rc2:A, 6rc3:A, 6rc4:A, 6rc5:A, 6rc6:A, 6rg6:A, 6rg7:A, 6rg8:A, 6rg9:A, 6rga:A, 6rgb:A, 6rgc:A, 6rgd:A, 6rge:A, 6rgf:A, 6rr2:A, 3v7u:A, 3v7w:A, 3v7y:A, 3v80:A, 3v8m:A, 3v8n:A, 3v8p:A, 3v8q:A, 3v8r:A, 6z61:A, 6z64:A, 6z65:A, 7zz7:A, 7zz9:A, 7zza:A, 7zzb:A, 7zzc:A, 7zzd:A, 7zze:A, 7zzf:A, 7zzg:A, 7zzh:A, 7zzj:A
6 7n29:B 350 183 0.1687 0.1200 0.2295 0.001 7n29:A, 7n29:C, 7n29:D, 7r4j:A, 7r4k:A, 7r4l:A, 7r4m:A
7 4l92:B 391 45 0.0522 0.0332 0.2889 2.5 4l92:A, 4l97:A, 4l97:B, 4l99:A, 4l99:B, 4rga:A, 4rga:B, 4rgg:A, 4rgg:B
8 3a36:A 314 147 0.1526 0.1210 0.2585 3.3 3a37:A, 5bwk:N
9 2qv7:A 303 33 0.0442 0.0363 0.3333 3.8
10 7vtl:A 373 57 0.0643 0.0429 0.2807 3.9 7vtm:A
11 4wer:A 285 92 0.0924 0.0807 0.2500 4.0
12 8i0d:A 446 53 0.0683 0.0381 0.3208 4.0 8i0e:A
13 7w9l:A 1420 122 0.1165 0.0204 0.2377 6.2 8g1a:A, 7w9k:A, 7w9m:A, 7w9p:A, 7w9t:A, 8xmo:A
14 4v8l:D 2822 40 0.0562 0.0050 0.3500 6.6 4ce4:o, 6hiv:US, 6hiv:UT, 6hiw:US, 6hiw:UT, 6hiy:US, 6hiy:UT, 4v8l:E, 4v8l:F, 4v8l:A, 4v8l:B, 4v8l:C, 4v8v:A, 4v8v:B, 4v8v:C, 4v8v:D, 4v8v:E, 4v8v:F, 4v8w:D, 4v8w:E, 4v8w:F, 4v8w:A, 4v8w:B, 4v8w:C
15 6gjc:A 2770 44 0.0562 0.0051 0.3182 7.0 6gjc:B, 6gjc:C, 6gjc:D, 6gjc:E, 6gjc:F
16 1dfo:B 417 24 0.0442 0.0264 0.4583 7.3 1dfo:A, 1dfo:D, 1dfo:C, 1eqb:A, 1eqb:B, 1eqb:D, 1eqb:C, 3g8m:A
17 1hyu:A 521 28 0.0562 0.0269 0.5000 8.1 1fl2:A, 4o5q:A, 4o5u:A, 4xvg:A, 4ykf:A, 4ykg:A
18 7d80:5 432 69 0.0884 0.0509 0.3188 8.6 7d6z:h, 1w2b:5
19 3sja:A 338 157 0.1526 0.1124 0.2420 9.5 3a36:B, 3a37:B, 3b2e:B, 3b2e:C, 3sja:E

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218