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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MQYKLILNGKTLKGCTTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE

The query sequence (length=56) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2i2y:A 150 56 0.9821 0.3667 0.9821 2.79e-33 9asq:H, 5bmg:A, 5bmg:B, 5bmg:H, 5bmg:D, 5bmg:E, 5bmg:F, 5bmg:G, 5bmh:A, 3v3x:C, 3v3x:D
2 5o94:A 56 56 0.8393 0.8393 0.8393 1.92e-29 5ofs:A, 5ofs:B, 5ofs:C, 5ofs:D
3 6nl8:A 56 56 0.8750 0.8750 0.8750 1.66e-28 6nla:A
4 7rxc:B 439 54 0.8393 0.1071 0.8704 7.14e-26 7rxd:B
5 5lde:B 225 53 0.7679 0.1911 0.8113 3.86e-20 5lde:A
6 6nl6:B 56 56 0.7500 0.7500 0.7500 2.24e-18 6nl6:C, 6nl6:D, 6nl7:B
7 8jxr:C 341 54 0.5714 0.0938 0.5926 2.42e-10
8 7nrr:AAA 329 32 0.2500 0.0426 0.4375 0.69 7nrr:BBB, 7nsw:AAA, 7nsw:BBB, 7ntd:AAA, 7ntd:BBB, 7nte:A, 7nte:B
9 6dft:F 321 23 0.1607 0.0280 0.3913 2.4 6dft:B, 6dft:D, 6dft:H, 6dft:J, 6dft:L
10 8khn:A 287 33 0.2143 0.0418 0.3636 3.3 8kho:A
11 7epq:A 296 30 0.1786 0.0338 0.3333 6.6 7epq:B
12 8hl1:AEFG 725 52 0.2857 0.0221 0.3077 7.1 8hl2:AEFG, 8hl3:AEFG, 8hl4:AEFG
13 7puk:A 425 28 0.1964 0.0259 0.3929 7.1 7puj:A, 7puk:C
14 4l9o:A 330 14 0.1607 0.0273 0.6429 7.4 4l9o:B
15 4zoh:C 161 23 0.2143 0.0745 0.5217 7.5
16 7esn:A 435 32 0.2143 0.0276 0.3750 7.8 7esk:A, 7esm:A, 8i4d:A, 7yqs:A
17 7wkp:A 167 25 0.1607 0.0539 0.3600 8.5 8k0k:I, 8k22:H, 8k23:H, 8k23:h, 8k24:h, 8k24:H, 8k27:I, 8k28:I, 8k29:I, 7wwu:I
18 5mcp:F 342 35 0.2143 0.0351 0.3429 8.9
19 6t69:A 205 42 0.3214 0.0878 0.4286 9.1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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