Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MQVTHSMPPQKLEIFKSLDDWARNNVLIHLKSVEKSWQPQDYLPDPVSDGFEEQVRELRERAKEIPDDYFVVLVGDMITE
EALPTYMSMLNRCDGIKDETGAEPSAWAMWTRAWTAEENRHGDLLNKYLYLSGRVDMRKIEKTIQYLIGSGMDIKSENSP
YLGFIYTSFQERATFISHANTAKLAQHWGDKNLAHICGSIASDEKRHATAYTKIVEKLAEIDPDTTVIAFADMMRKKITM
PAHLMYDGSDELLFKHFTAVAQRVGVYSALDYCDILEFLVDKWNVERLTGLSDEGRKAQEYVCELGPKIRRLEERAQGRA
KEAPTMPFSWIFDRQVKL

The query sequence (length=338) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2uw1:B 338 338 1.0000 1.0000 1.0000 0.0 2uw1:A
2 2xz1:A 353 338 0.8166 0.7819 0.8166 0.0 1afr:A, 1afr:B, 1afr:C, 1afr:D, 1afr:E, 1afr:F, 2j2f:A, 2j2f:B, 2j2f:C, 2j2f:D, 2j2f:E, 2j2f:F, 1oq4:A, 1oq4:B, 1oq4:C, 1oq4:D, 1oq4:E, 1oq4:F, 1oq9:A, 1oqb:A, 1oqb:B, 1oqb:C, 1oqb:D, 1oqb:E, 1oqb:F, 4v0j:A, 4v0j:B, 4v0j:C, 4v0j:D, 4v0j:E, 4v0j:F, 2xz0:A, 2xz0:B, 2xz0:C, 2xz1:B
3 7t63:B 334 333 0.6095 0.6168 0.6186 5.56e-162 7t63:A
4 7pp7:A 311 326 0.5680 0.6174 0.5890 6.12e-144
5 1za0:A 242 120 0.0976 0.1364 0.2750 1.45e-04
6 7vl3:A 707 34 0.0414 0.0198 0.4118 0.58 7vkx:A, 7vkx:B, 7vky:A, 7vky:B, 7vkz:A, 7vkz:B, 7vl0:A, 7vl0:B, 7vl1:A, 7vl1:B, 7vl2:A, 7vl2:B, 7vl3:B, 7vl4:A, 7vl4:B, 7vl5:B, 7vl6:A, 7vl6:B, 7vl7:A, 7vl7:B, 7x87:A, 7x87:B
7 3i46:A 289 84 0.0592 0.0692 0.2381 3.6 3i46:B
8 3cc2:R 150 62 0.0533 0.1200 0.2903 4.5 3cc4:R, 3cc7:R, 3cce:R, 3ccj:R, 3ccl:R, 3ccm:R, 3ccq:R, 3ccr:R, 3ccs:R, 3ccu:R, 3ccv:R, 3cd6:R, 3cma:R, 3cme:R, 3cpw:Q, 3cxc:Q, 1ffk:O, 3g4s:R, 3g6e:R, 3g71:R, 3i55:R, 3i56:R, 1jj2:Q, 1k73:S, 1k8a:S, 1k9m:S, 1kc8:S, 1kd1:S, 1kqs:Q, 1m1k:S, 1m90:S, 1n8r:S, 1nji:S, 2otj:R, 2otl:R, 3ow2:Q, 1q7y:S, 1q81:S, 1q82:S, 1q86:S, 2qa4:R, 2qex:R, 1qvf:Q, 1qvg:Q, 1s72:R, 4v9f:R, 1vq4:R, 1vq5:R, 1vq6:R, 1vq7:R, 1vq8:R, 1vq9:R, 1vqk:R, 1vql:R, 1vqm:R, 1vqn:R, 1vqo:R, 1vqp:R, 1w2b:Q, 1yhq:R, 1yi2:R, 1yij:R, 1yit:R, 1yj9:R, 1yjn:R, 1yjw:R
9 5kzl:A 205 58 0.0385 0.0634 0.2241 8.0

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218