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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MQVESLQNLQVKIRNDERNHSLTKKYLTDDIVKKYQATKTSLGGTLAQCVNTNAYNPGALLPRSCDLNAYETFRDFFDAV
IADYHKVPDGKIQHPKSNFGDLKSLSFTDLNTYGNLVVSTRVRLGRTVEGFGFGPTLTKETRIELENKISTALHNLSGEY
EGTYYPLTGMSEEDRIKLVNDHFLFRNDDNVLRDAGGYIDWPTGRGIFINKQKNFLVWINEEDHIRVISMQKGGGLTAVY
KRLADAIQELSKSLKFAFNDRLGFITFCPSNLGTTLRASVHAKIPMLASLPNFKEICEKHGIQPRGTHGEHTESVGGIYD
LSNKRRLGLTELDAVTEMHSGVRALLELEVMLQEYNKGAPEGVMPVEPLTYLAKLLEGASIEKCYTRKYLTPEIIKKYDG
KRTTHGATLAHMIRNGAYNNRSICPRTGEAECYSTFIDYLDPLICDYHGVKDSAFKHPAPTFGDLSKLPFGDLDPTGKFI
VSTRVRVGRSVEGFLFPTIMSKTDRIKLEQVISGALKGLTGEHAGTYYPLTDMKEEDRKQLVEDHFLFKNDDPVLRDAGG
YRDWPVGRGIFHNNSKTFLVWVCEEDHMRIISMQQGGNLAAVYKRLIEGINAIGKSMKFAHSDKYGYITCCPSNLGTSMR
ASVLLKIPKLSSQPKKLDEICAKYMLQARGLYGEHTESPDGTYDISNKRRLGLTELQAAHEMAEGVAKMIEIEKGL

The query sequence (length=716) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4woe:A 716 716 1.0000 1.0000 1.0000 0.0 4wod:A, 4woe:B
2 4rf7:B 700 702 0.4288 0.4386 0.4373 0.0 4rf7:A, 4rf8:A, 4rf8:B, 4rf9:A, 4rf9:B
3 4rf7:B 700 336 0.2151 0.2200 0.4583 4.53e-92 4rf7:A, 4rf8:A, 4rf8:B, 4rf9:A, 4rf9:B
4 4bg4:A 356 352 0.2360 0.4747 0.4801 1.51e-111 4bg4:B, 4bhl:A
5 4bg4:A 356 334 0.2304 0.4635 0.4940 6.75e-107 4bg4:B, 4bhl:A
6 1bg0:A 356 343 0.2318 0.4663 0.4840 1.59e-108 4gvy:A, 4gvz:A, 4gw0:A, 4gw2:A, 5j99:A, 5j9a:A, 1m15:A, 1p50:A, 1p52:A, 1rl9:A, 1sd0:A
7 1bg0:A 356 337 0.2249 0.4522 0.4777 7.17e-102 4gvy:A, 4gvz:A, 4gw0:A, 4gw2:A, 5j99:A, 5j9a:A, 1m15:A, 1p50:A, 1p52:A, 1rl9:A, 1sd0:A
8 6ky3:A 353 340 0.2277 0.4618 0.4794 1.23e-102
9 6ky3:A 353 352 0.2221 0.4504 0.4517 1.35e-94
10 5u92:A 347 343 0.2053 0.4236 0.4286 3.13e-93
11 5u92:A 347 343 0.2025 0.4179 0.4227 5.58e-90
12 3jq3:A 364 343 0.1983 0.3901 0.4140 2.21e-80
13 3jq3:A 364 348 0.1830 0.3599 0.3764 1.71e-70
14 4v7n:BB 388 339 0.2053 0.3789 0.4336 3.22e-77 4v7n:AA, 4v7n:AB, 4v7n:AC, 4v7n:AD, 4v7n:AE, 4v7n:AF, 4v7n:AG, 4v7n:AH, 4v7n:AI, 4v7n:AJ, 4v7n:AK, 4v7n:AL, 4v7n:AM, 4v7n:AN, 4v7n:AO, 4v7n:AP, 4v7n:AQ, 4v7n:AR, 4v7n:BA, 4v7n:BC, 4v7n:BD, 4v7n:BE, 4v7n:BF, 4v7n:BG, 4v7n:BH, 4v7n:BI, 4v7n:BJ, 4v7n:BK, 4v7n:BL, 4v7n:BM, 4v7n:BN, 4v7n:BO, 4v7n:BP, 4v7n:BQ, 4v7n:BR
15 4v7n:BB 388 349 0.1899 0.3505 0.3897 4.26e-70 4v7n:AA, 4v7n:AB, 4v7n:AC, 4v7n:AD, 4v7n:AE, 4v7n:AF, 4v7n:AG, 4v7n:AH, 4v7n:AI, 4v7n:AJ, 4v7n:AK, 4v7n:AL, 4v7n:AM, 4v7n:AN, 4v7n:AO, 4v7n:AP, 4v7n:AQ, 4v7n:AR, 4v7n:BA, 4v7n:BC, 4v7n:BD, 4v7n:BE, 4v7n:BF, 4v7n:BG, 4v7n:BH, 4v7n:BI, 4v7n:BJ, 4v7n:BK, 4v7n:BL, 4v7n:BM, 4v7n:BN, 4v7n:BO, 4v7n:BP, 4v7n:BQ, 4v7n:BR
16 3ju5:C 367 348 0.1983 0.3869 0.4080 7.02e-75 3ju5:A, 3ju6:A
17 3ju5:C 367 344 0.1941 0.3787 0.4041 4.20e-72 3ju5:A, 3ju6:A
18 1vrp:B 374 346 0.2011 0.3850 0.4162 8.62e-75 1vrp:A
19 1vrp:B 374 354 0.1941 0.3717 0.3927 7.95e-73 1vrp:A
20 1u6r:A 380 346 0.1969 0.3711 0.4075 1.61e-74 2crk:A, 1u6r:B
21 1u6r:A 380 341 0.1816 0.3421 0.3812 1.05e-70 2crk:A, 1u6r:B
22 4z9m:C 375 350 0.1941 0.3707 0.3971 1.66e-72 4z9m:A, 4z9m:B, 4z9m:D, 4z9m:E, 4z9m:F, 4z9m:G, 4z9m:H
23 4z9m:C 375 339 0.1872 0.3573 0.3953 5.52e-71 4z9m:A, 4z9m:B, 4z9m:D, 4z9m:E, 4z9m:F, 4z9m:G, 4z9m:H
24 1qh4:D 380 349 0.1899 0.3579 0.3897 1.64e-71 3b6r:B, 3drb:B, 7tun:A, 7tun:B
25 1qh4:D 380 341 0.1913 0.3605 0.4018 2.79e-70 3b6r:B, 3drb:B, 7tun:A, 7tun:B
26 6fh2:A 353 243 0.1034 0.2096 0.3045 2.22e-23 6fh3:A, 6fh3:B
27 6fh2:A 353 245 0.0922 0.1870 0.2694 3.81e-22 6fh3:A, 6fh3:B
28 3fg3:A 687 119 0.0377 0.0393 0.2269 4.9 3fg1:A, 3fg1:B, 3fg1:C, 3fg1:D, 3fg3:B, 3fg3:C, 3fg3:D, 3fg4:A, 3fg4:B, 3fg4:C, 3fg4:D, 2fnq:A, 2fnq:B, 4qwt:A, 4qwt:B, 4qwt:C, 4qwt:D
29 3auy:A 366 188 0.0656 0.1284 0.2500 7.3 3aux:A, 3auy:B, 3av0:B, 5dny:D, 5dny:B, 5f3w:D, 5f3w:B
30 4nv0:B 300 46 0.0209 0.0500 0.3261 9.6 4nv0:A, 4nwi:A, 4nwi:B
31 1i3k:A 347 52 0.0223 0.0461 0.3077 9.7 1ek5:A, 1ek6:A, 1ek6:B, 1hzj:A, 1hzj:B, 1i3k:B, 1i3l:A, 1i3l:B, 1i3m:A, 1i3m:B, 1i3n:A, 1i3n:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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