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BioLiP
>protein
MQTLSERLKKRRIALKMTQTELATKAGVKQQSIQLIEAGVTKRPRFLFEIAMALNCDPVWLQYG

The query sequence (length=64) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3cro:L 66 64 1.0000 0.9697 1.0000 8.12e-43 3cro:R
2 2or1:L 63 62 0.5000 0.5079 0.5161 1.30e-15 2or1:R, 1per:L, 1per:R, 1rpe:L, 1rpe:R
3 8tac:B 66 36 0.2344 0.2273 0.4167 0.036
4 3fym:A 82 64 0.3281 0.2561 0.3281 0.049
5 4yp9:B 342 50 0.2344 0.0439 0.3000 0.12 2hj9:A, 2hj9:B, 1jx6:A, 4yp9:A, 4yr7:A, 4yr7:B, 4yrz:A, 4yrz:B
6 7p4a:B 207 28 0.1875 0.0580 0.4286 0.35
7 8tzj:A 220 66 0.3125 0.0909 0.3030 0.80 8tzj:B, 8tzk:A, 8tzk:B, 8tzl:A, 8tzl:B
8 1b0n:A 103 55 0.2500 0.1553 0.2909 0.86 3zkc:A, 3zkc:B
9 4pu4:D 78 61 0.2812 0.2308 0.2951 2.4 4pu3:D, 4pu3:C, 4pu4:C
10 4kp1:A 423 56 0.2812 0.0426 0.3214 2.7 4nqy:A, 4nqy:B
11 5ze3:B 443 44 0.2344 0.0339 0.3409 2.9 5ze3:A
12 3j6b:b 155 26 0.2031 0.0839 0.5000 3.5 5mrc:b, 5mre:b, 5mrf:b
13 4yg1:A 72 47 0.2656 0.2361 0.3617 3.6 3dnv:B, 3hzi:B, 5k98:B, 5k98:P, 4yg1:B, 4yg1:C, 4yg1:D, 4yg4:A, 4yg4:B, 4yg4:D, 4yg7:B, 4yg7:E, 4yg7:C, 4yg7:G, 4z58:A, 4z59:A, 4z5c:A, 4z5c:B, 4z5d:A, 4z5d:B, 4z5h:A
14 8t13:B 877 41 0.1719 0.0125 0.2683 5.7 3evg:A, 1l9k:A, 2p1d:A, 2p3l:A, 2p3o:A, 2p3q:A, 2p40:A, 2p41:A, 1r6a:A, 8t12:B, 7xd8:A, 7xd8:D, 7xd8:G, 7xd8:J, 7xd8:M, 7xd8:P, 7xd9:A, 7xd9:D, 7xd9:G, 7xd9:J, 7xd9:M, 7xd9:P, 5zqk:A, 5zqk:B
15 4wad:A 498 20 0.1406 0.0181 0.4500 7.4 4x6l:A, 4x6l:B, 4x6l:C, 4x7m:A, 4x7m:B, 4x7r:A, 4x7r:B
16 3kxa:A 131 29 0.2031 0.0992 0.4483 7.6 3kxa:B, 3kxa:C, 3kxa:D
17 4g2t:A 356 45 0.2188 0.0393 0.3111 8.0
18 7wnu:B 554 21 0.1719 0.0199 0.5238 8.9 7wnt:A, 7wnu:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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