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BioLiP
>protein
MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLCPNYLFVEFDPEVIHTTTINATRGVSHFVR
FGASPAIVPSAVIHQLSVYKPEGAFEGFQAIFTEPDGEARCMLLLNLINKEIKHS

The query sequence (length=135) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8pfg:P 136 135 0.9926 0.9853 0.9926 4.53e-100 5ond:A, 5ond:B, 8pib:P
2 8phk:P 162 153 0.9852 0.8210 0.8693 1.16e-93 6c6s:D, 6c6t:D, 8pen:P, 8pfj:P, 8pid:P, 8pil:P, 8pim:P, 8upo:AB, 8upr:AB, 8uql:AB, 8uqm:AB, 8uqp:AB, 8ur0:AB, 8urh:AB, 8uri:AB, 8urx:AB, 8ury:AB
3 8f5g:C 175 93 0.1704 0.1314 0.2473 0.001 8f5g:A
4 8e74:Z 122 93 0.1556 0.1721 0.2258 0.018 8e82:Z
5 4paw:A 197 51 0.1259 0.0863 0.3333 2.1 4paw:B
6 5d88:A 247 72 0.1407 0.0769 0.2639 4.2
7 2dkk:A 399 32 0.1037 0.0351 0.4375 5.1 2nz5:A, 2nz5:B, 2nza:A, 2nza:B
8 7en2:B 1410 82 0.1704 0.0163 0.2805 6.9 7emy:A, 7emy:B, 7en1:A, 7en1:B, 7en2:A
9 4bmk:A 398 29 0.0889 0.0302 0.4138 8.7 4bmk:B, 2jg2:A, 2w8j:A, 2w8t:A, 2w8u:A, 2w8v:A, 2w8w:A, 2xbn:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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