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BioLiP
>protein
MQSINFRTARGNLSEVLNNVEAGEEVEITRRGREPAVIVSKATFEAYKKAALDAEFASLFD

The query sequence (length=61) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4zm2:B 61 61 1.0000 1.0000 1.0000 3.52e-39 4zm0:C, 4zm0:D, 4zm0:A, 4zm0:B, 4zm2:D, 4zm2:C, 4zm2:A
2 6o8w:W 94 48 0.2131 0.1383 0.2708 1.8 6o8x:W, 6o8y:W, 6o8z:W, 6o90:W
3 6zqb:JO 236 30 0.1803 0.0466 0.3667 6.0 7ajt:JO, 6zqc:JO
4 5zmm:A 530 18 0.1475 0.0170 0.5000 6.4 5zmm:B, 5zmm:C, 5zmm:E, 5zmm:F, 5zmn:A, 5zmo:A
5 8sq0:A 1402 24 0.1311 0.0057 0.3333 7.7 8sq0:B, 8sql:A, 8sqm:A
6 2f9r:A 285 20 0.1639 0.0351 0.5000 8.4 2f9r:B, 2f9r:C, 2f9r:D, 1xx1:A, 1xx1:B, 1xx1:C, 1xx1:D
7 2liq:A 153 24 0.1803 0.0719 0.4583 9.0 4uso:A
8 2c3w:B 95 24 0.1475 0.0947 0.3750 9.0 2c3w:A, 2c3w:C, 2c3w:D, 2c3x:A
9 6ke6:RC 278 30 0.1803 0.0396 0.3667 9.0 7d5s:RC, 6lqp:RC, 6lqq:RC, 6lqu:RC, 4qmf:B, 4qmf:D, 7suk:NK, 5wyj:K1, 5wyk:K1, 6zqa:JO

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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