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BioLiP
>protein
MQRGNFRNQRKIVKCFNCGKEGHTARNCRAPRKKGCWKCGKEGHQMKDCTERQAN

The query sequence (length=55) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6rwg:A 157 55 0.9091 0.3185 0.9091 1.37e-33 1a1t:A, 1aaf:A, 1bj6:A, 2buo:A, 1esk:A, 2exf:A, 1f6u:A, 5i1r:A, 2jzw:A, 2l4l:A, 2m3z:A, 1mfs:A, 1q3y:A, 1q3z:A, 7r7p:I, 7r7p:L
2 2ec7:A 49 48 0.6000 0.6735 0.6875 9.28e-21
3 2a51:A 39 39 0.4000 0.5641 0.5641 1.06e-11
4 7c4c:A 332 46 0.3818 0.0633 0.4565 1.47e-06 7c42:A, 7c43:A, 7c45:A, 7c47:A, 7c4b:A
5 7c4c:A 332 41 0.2545 0.0422 0.3415 0.025 7c42:A, 7c43:A, 7c45:A, 7c47:A, 7c4b:A
6 7c4c:A 332 47 0.2727 0.0452 0.3191 0.23 7c42:A, 7c43:A, 7c45:A, 7c47:A, 7c4b:A
7 2bl6:A 37 35 0.3455 0.5135 0.5429 1.73e-06
8 5w0n:A 379 23 0.2364 0.0343 0.5652 0.009 5w0m:A, 5w0m:C, 5w0n:B
9 5w0b:A 334 20 0.2182 0.0359 0.6000 0.021
10 7s7b:F 352 17 0.1818 0.0284 0.5882 0.041 7s7b:B, 7s7c:B
11 7s7b:F 352 17 0.1636 0.0256 0.5294 0.15 7s7b:B, 7s7c:B
12 2li8:A 63 38 0.2364 0.2063 0.3421 0.20
13 2ihx:A 50 43 0.2909 0.3200 0.3721 0.23
14 5udz:A 139 38 0.2364 0.0935 0.3421 0.23 8ops:B, 8opt:B, 8ost:B, 3trz:A, 3trz:B, 3trz:C, 3trz:D, 3trz:E, 3trz:F, 3ts0:A, 3ts0:B, 3ts2:A, 3ts2:B, 5udz:B
15 2cqf:A 63 40 0.2364 0.2063 0.3250 0.29
16 6bk8:O 229 28 0.2000 0.0480 0.3929 0.50
17 6bk8:O 229 17 0.1636 0.0393 0.5294 1.5
18 9fmd:U 295 21 0.2000 0.0373 0.5238 0.74 8c6j:h, 6icz:Z, 6qdv:c, 7w5a:1, 7w5b:1, 5xjc:Z
19 2ysa:A 55 14 0.1455 0.1455 0.5714 1.0
20 2ysa:A 55 14 0.1636 0.1636 0.6429 1.2
21 6lum:A 539 25 0.1455 0.0148 0.3200 1.0 6lum:J, 6lum:P
22 6exn:c 204 17 0.1636 0.0441 0.5294 1.6
23 6exn:c 204 28 0.2000 0.0539 0.3929 2.0
24 8opp:A 670 16 0.1636 0.0134 0.5625 1.8
25 8opt:A 783 16 0.1636 0.0115 0.5625 1.8 8ops:A, 5w0m:B, 5w0n:C, 5w0o:A, 5w0o:B
26 3nyb:B 64 20 0.1455 0.1250 0.4000 3.9
27 3ir9:A 162 49 0.2909 0.0988 0.3265 4.6 3ir9:B
28 7b9v:c 37 17 0.1636 0.2432 0.5294 4.8
29 1kea:A 217 25 0.2364 0.0599 0.5200 5.4
30 3zt9:A 192 26 0.1636 0.0469 0.3462 7.0
31 2d7d:A 621 25 0.1636 0.0145 0.3600 7.6 2nmv:A, 3v4r:B, 3v4r:A
32 7el9:A 1731 26 0.2364 0.0075 0.5000 9.4 7el9:D, 7elc:A
33 7elb:A 1937 26 0.2364 0.0067 0.5000 9.5 7ckm:A, 7elb:C, 6kld:A, 6kle:A, 6klh:A, 6klh:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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