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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MQRGKVKWFNNEKGYGFIEVEGGSDVFVHFTAIQGEGFKTLEEGQEVSFEIVQGNRGPQAANVVKL

The query sequence (length=66) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1c9o:A 66 66 1.0000 1.0000 1.0000 7.50e-43 1c9o:B, 2hax:A, 2hax:B
2 2es2:A 67 65 0.8333 0.8209 0.8462 6.46e-35 3pf4:B, 3pf5:B, 3pf5:A
3 7ot5:B 66 64 0.5606 0.5606 0.5781 8.59e-21
4 6a6j:A 90 66 0.4394 0.3222 0.4394 5.71e-11 6a6j:C, 6a6l:A, 6ktc:A, 6kug:A, 6lmr:A, 5yts:A, 5ytt:A, 5ytv:A, 5ytx:A
5 7f3i:A 93 66 0.4242 0.3011 0.4242 2.65e-10 7f3i:C, 7f3i:E, 7f3j:A, 7f3j:C, 7f3j:E, 7f3j:G, 7f3k:A, 7f3l:A
6 7oii:B 39 38 0.3333 0.5641 0.5789 7.87e-10
7 4a75:A 89 69 0.3788 0.2809 0.3623 1.30e-08 4a75:C, 4a75:E, 4a75:G, 4a76:A, 4a76:G, 4a76:C, 4a76:E, 4alp:A, 4alp:D
8 5udz:A 139 69 0.3485 0.1655 0.3333 1.02e-07 8ops:B, 8opt:B, 8ost:B, 3trz:A, 3trz:B, 3trz:C, 3trz:D, 3trz:E, 3trz:F, 3ts0:A, 3ts0:B, 3ts2:A, 3ts2:B, 5udz:B
9 7zhh:A 219 67 0.3182 0.0959 0.3134 0.007
10 2cb1:A 404 15 0.1667 0.0272 0.7333 0.78
11 8d1x:D 469 55 0.3030 0.0426 0.3636 1.1 8d1x:A, 8d1x:B, 8d1x:C, 8d1x:E, 8d1x:F
12 6yw5:ZZ 312 46 0.2576 0.0545 0.3696 2.0 6ywe:ZZ, 6ywx:ZZ, 6ywy:ZZ
13 8fxi:C 630 47 0.1970 0.0206 0.2766 5.2 8fxi:D
14 4ags:A 445 40 0.2121 0.0315 0.3500 5.7 4ags:B, 4ags:C
15 7ao7:E 402 32 0.1970 0.0323 0.4062 6.5 7ant:A, 7ant:B, 7ao7:A, 7ao7:B, 7ao7:C, 7ao7:D, 7ao7:F
16 2ix1:A 643 17 0.1212 0.0124 0.4706 8.4 2id0:A, 2id0:B, 2id0:C, 2id0:D, 2ix0:A
17 4ejy:A 289 61 0.2576 0.0588 0.2787 8.6 4ejy:B, 4ejz:A, 4ejz:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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