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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MQQKLENIKFVITDVDGVLTDGQLHYDANGEAIKSFHVRDGLGIKMLMDADIQVAVLSGRDSPILRRRIADLGIKLFFLG
KLEKETACFDLMKQAGVTAEQTAYIGDDSVDLPAFAACGTSFAVADAPIYVKNAVDHVLSTHGGKGAFREMSDMILQAQG
KSSVFDTAQGFLKSVKSMG

The query sequence (length=179) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4hgp:A 179 179 1.0000 1.0000 1.0000 1.12e-130 1k1e:A, 1k1e:B, 1k1e:C, 1k1e:D, 1k1e:E, 1k1e:F, 1k1e:G, 1k1e:H, 1k1e:I, 1k1e:J, 1k1e:K, 1k1e:L
2 3hyc:A 181 168 0.4134 0.4088 0.4405 5.11e-43 3hyc:B, 3hyc:C, 3hyc:D, 3hyc:E, 3hyc:F, 3hyc:G, 3hyc:H, 3i6b:A, 3i6b:B, 3i6b:C, 3i6b:D, 2r8e:A, 2r8e:B, 2r8e:C, 2r8e:D, 2r8e:E, 2r8e:F, 2r8e:G, 2r8e:H, 2r8y:A, 2r8y:B, 2r8y:C, 2r8y:D, 2r8y:E, 2r8y:F, 2r8y:G, 2r8y:H, 2r8y:I, 2r8y:J, 2r8y:K, 2r8y:L, 2r8y:M, 2r8y:N, 2r8y:O, 2r8y:P, 2r8z:A, 2r8z:B, 2r8z:C, 2r8z:D, 2r8z:E, 2r8z:F, 2r8z:G, 2r8z:H, 2r8z:I, 2r8z:J, 2r8z:K, 2r8z:L, 2r8z:M, 2r8z:N, 2r8z:O, 2r8z:P
3 3n1u:A 182 172 0.4078 0.4011 0.4244 2.09e-40
4 3n07:A 179 159 0.3575 0.3575 0.4025 1.35e-39 3n07:B, 3n07:C, 3n07:D
5 3nrj:I 177 161 0.3631 0.3672 0.4037 1.29e-36 3nrj:A, 3nrj:B, 3nrj:C, 3nrj:D, 3nrj:E, 3nrj:F, 3nrj:G, 3nrj:H, 3nrj:J, 3nrj:K, 3nrj:L
6 4um7:A 175 163 0.3464 0.3543 0.3804 7.90e-34 4um5:A, 4um5:B, 4um5:C, 4um5:D, 4um7:B, 4um7:C, 4um7:D, 4ume:A, 4umf:A, 4umf:B, 4umf:C, 4umf:D
7 3e81:A 164 152 0.3073 0.3354 0.3618 6.22e-30 3e81:B, 3e81:D, 3e81:C, 3e84:A, 3e84:B, 3e84:C, 3e84:D, 3e8m:A, 3e8m:B, 3e8m:C, 3e8m:D, 4hgo:A, 4hgo:B, 4hgo:C, 4hgo:D, 4hgq:A, 4hgq:B, 4hgq:C, 4hgq:D, 4hgq:E, 4hgq:F, 4hgq:G, 4hgq:H, 4hgr:A, 4hgr:B, 4hgr:C, 4hgr:D, 4hgr:E, 4hgr:F, 4hgr:G, 4hgr:H
8 3mmz:D 174 151 0.2961 0.3046 0.3510 1.55e-21 3mmz:A, 3mmz:B, 3mmz:C
9 4hgn:A 165 157 0.2458 0.2667 0.2803 1.73e-20 4hgn:B, 4hgn:C, 4hgn:D
10 3l7y:A 266 75 0.1173 0.0789 0.2800 0.35
11 3l7y:A 266 56 0.0950 0.0639 0.3036 0.95
12 4dwo:A 268 57 0.1006 0.0672 0.3158 0.72 3niw:A
13 7s4m:F 244 29 0.0782 0.0574 0.4828 1.2 7s4m:B, 7s4m:J
14 2fja:A 642 67 0.1117 0.0312 0.2985 1.2 2fja:C, 2fjb:A, 2fjb:C, 2fjd:A, 2fjd:C, 2fje:A, 2fje:C, 1jnr:A, 1jnr:C, 1jnz:A, 1jnz:C
15 1nrw:A 285 75 0.1229 0.0772 0.2933 1.4
16 2b30:A 284 65 0.1061 0.0669 0.2923 1.5 2b30:B, 2b30:C, 2b30:D
17 8bp1:A 231 67 0.1173 0.0909 0.3134 2.1 4ffd:A, 6q7n:A, 6q7o:A, 6q7p:A, 6q7r:A, 6z1k:A
18 8a1z:A 396 45 0.0894 0.0404 0.3556 2.5 8a21:A, 5is2:A, 5it0:A, 5it4:A, 5jjb:A, 5jlp:A, 5jlr:A, 5jma:A, 3p96:A, 5t41:A
19 1obg:A 305 52 0.0950 0.0557 0.3269 2.6 2cnq:A, 2cnu:A, 2cnv:A, 1obd:A
20 7bss:A 816 55 0.0894 0.0196 0.2909 4.4 7bsu:A, 7bsv:A, 7bsw:A, 7vsg:A
21 4rn3:A 210 47 0.0615 0.0524 0.2340 6.0 4rn3:B
22 6xpd:B 303 75 0.1229 0.0726 0.2933 7.0 6xpd:A, 6xpe:B, 6xpe:A
23 3txa:A 583 38 0.0670 0.0206 0.3158 7.4 3tvy:A, 3tw0:A, 3tw0:B, 3tw0:C, 3tw0:D
24 6pt7:A 500 37 0.0782 0.0280 0.3784 7.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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