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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MQPLVFDMAYENYMKRKELQNTVSQLLESEGWNRRNVDPFHIYFCNLKIDGALHRELVKRYQEKWDKLLLTSTEKSHVDL
FPKDSIIYLTADSPNVMTTFRHDKVYVIGSFVDKSMQPGTSLAKAKRLNLATECLPLDKYLQWEIGNKNLTLDQMIRILL
CLKNNGNWQEALQFVPKR

The query sequence (length=178) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8cbk:F 343 177 0.9944 0.5160 1.0000 2.51e-133 8cbl:F, 8cbm:F, 8cbo:E, 5nfj:A, 5nfj:B, 5nfj:C, 7onu:F
2 4jwf:A 187 177 0.2865 0.2727 0.2881 9.95e-18 4jwf:B, 4jwh:A, 4jwh:B
3 4jwj:A 193 185 0.2584 0.2383 0.2486 3.55e-14 4jwj:B
4 4fmw:A 178 181 0.2584 0.2584 0.2541 8.14e-14 4fmw:B
5 2nvo:A 496 81 0.1404 0.0504 0.3086 0.16
6 6esq:A 392 97 0.1461 0.0663 0.2680 0.30 6esq:B, 6esq:C, 6esq:D
7 8oyf:A 310 34 0.0730 0.0419 0.3824 0.69 8oyg:A, 3zux:A, 3zuy:A
8 4gcz:B 378 45 0.0843 0.0397 0.3333 1.2 4gcz:A
9 2ynm:D 488 54 0.1292 0.0471 0.4259 1.5
10 8p0u:A 621 95 0.1461 0.0419 0.2737 1.8 8p0b:A, 8p0g:A, 8z85:A, 8z8j:A, 8z8n:A, 8z8x:A, 8z90:A, 8z97:A, 8z98:A, 8z9h:A, 8z9h:H, 8z9q:A, 8z9r:A, 8z9r:H
11 5uid:A 367 48 0.0843 0.0409 0.3125 2.9 5uid:D
12 4hxg:F 614 54 0.0899 0.0261 0.2963 3.3 4hxe:B, 4hxf:B, 4hxg:A, 4hxg:B, 4hxg:C, 4hxg:D, 4hxg:E, 4hxg:G, 4hxg:H, 4hxg:I, 4hxg:L
13 5h59:A 311 48 0.0955 0.0547 0.3542 5.0 5h5j:A, 5h5j:C, 1jb9:A, 3lo8:A, 3lvb:A, 5vw2:A, 5vw3:A, 5vw4:A, 5vw5:A, 5vw6:A, 5vw7:A, 5vw8:A, 5vw9:A, 5vwa:A, 5vwb:A
14 8uu6:E 205 49 0.0730 0.0634 0.2653 5.7 8a57:I, 8a5i:I, 8a63:I, 7nhn:I, 8uu4:E, 8uu5:E, 8uu7:E, 8uu8:E, 8uu9:E, 8uua:E

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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