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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MQPKDTPELRALYKSFEEESIIPLWTQLGDLMPIHPKSKAVPHVWKWSTLLRLARKSGELVPVGRGGERRALGLANPGLG
GNAYISPTMWAAIQYLGPRETAPEHRHSQNAFRFVVEGEGVWTVVNGDPVRMSRGDLLLTPGWCFHGHMNDTDQPMAWID
GLDIPFSQQMDVGFFEFGSDYATPNFSRGERLWCHPGLRPLSGLQNTVASPIGAYRWEFTDRALTEQLLLEDEGQPATVA
PGHAAIRYVNPTTGGDVMPTLRCEFHRLRAGTETATRNEVGSTVFQVFEGAGAVVMNGETTKLEKGDMFVVPSWVPWSLQ
AETQFDLFRFSDAPIMEALSFMRTKIEGQ

The query sequence (length=349) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3nl1:A 366 353 0.9971 0.9508 0.9858 0.0 4fag:A, 4fah:A, 4fbf:A, 3njz:A, 3nkt:A, 3nst:A, 3nvc:A, 3nw4:A, 2phd:A, 2phd:B, 2phd:C, 2phd:D
2 2d40:A 289 278 0.3037 0.3668 0.3813 3.06e-53 2d40:B, 2d40:C, 2d40:D
3 2d40:A 289 133 0.0888 0.1073 0.2331 1.8 2d40:B, 2d40:C, 2d40:D
4 3bu7:B 358 346 0.3238 0.3156 0.3266 5.15e-50 3bu7:A
5 8ch4:D 183 113 0.0888 0.1694 0.2743 1.59e-05 8ch4:A, 8ch4:B, 8ch4:C
6 8ch4:D 183 94 0.0602 0.1148 0.2234 0.045 8ch4:A, 8ch4:B, 8ch4:C
7 3h9a:A 225 70 0.0659 0.1022 0.3286 0.17 3h7j:A, 3h7j:B, 3h7y:A, 3h7y:B, 3h9a:B
8 5i8s:A 179 47 0.0372 0.0726 0.2766 0.35 5i8t:A, 5i8y:A, 5i91:A, 5i93:A
9 3tgw:B 441 50 0.0544 0.0431 0.3800 0.68 3b2q:A, 3b2q:B, 3dsr:A, 3dsr:B, 3eiu:A, 3eiu:B, 3tiv:B
10 2hji:A 156 42 0.0430 0.0962 0.3571 1.0
11 1qwr:A 315 33 0.0344 0.0381 0.3636 1.3 1qwr:B
12 7jxg:A 178 47 0.0344 0.0674 0.2553 1.4 4qgn:A
13 4ka7:A 695 47 0.0516 0.0259 0.3830 1.5 4ka8:A, 4put:A
14 5cu1:A 197 77 0.0573 0.1015 0.2597 1.5
15 5cad:A 379 78 0.0630 0.0580 0.2821 1.9
16 5fq0:C 109 44 0.0430 0.1376 0.3409 2.4
17 5u93:B 161 60 0.0516 0.1118 0.3000 2.5 5u93:A, 5u9e:A, 5u9e:B
18 3iup:A 376 133 0.1003 0.0931 0.2632 4.0 3iup:B
19 5e1r:C 358 56 0.0487 0.0475 0.3036 4.3 5e1r:A, 5e1r:B, 5e1r:D, 5e1r:E, 5e1r:F
20 7en2:B 1410 34 0.0401 0.0099 0.4118 4.4 7emy:A, 7emy:B, 7en1:A, 7en1:B, 7en2:A
21 3srk:B 405 55 0.0544 0.0469 0.3455 5.1 3qv7:B, 3qv8:A
22 3hqp:A 498 55 0.0544 0.0382 0.3455 5.9 3hqo:K, 3hqo:A, 3hqo:B, 3hqo:C, 3hqp:B, 3hqp:C, 3hqp:D, 3hqp:E, 3hqp:F, 3hqp:G, 3hqp:H, 3hqp:I, 3hqp:J, 3hqp:K, 3hqp:L, 3hqp:M, 3hqp:N, 3hqp:O, 3hqp:P, 3hqq:A, 3hqq:B, 3hqq:C, 3hqq:D, 3hqq:E, 3hqq:F, 3hqq:G, 3hqq:H, 3hqq:I, 3hqq:J, 3hqq:K, 3hqq:L, 3hqq:M, 3hqq:N, 3hqq:O, 3hqq:P, 3hqq:Q, 3hqq:R, 3hqq:S, 3hqq:T, 3hqq:U, 3hqq:V, 3hqq:W, 3hqq:X, 3pp7:B, 3qv6:A, 3qv7:D, 3qv7:A, 3qv8:D, 3srk:A
23 3jb6:A 1196 58 0.0487 0.0142 0.2931 6.6 5h0r:F, 6ty8:A
24 7d4i:RJ 738 89 0.0659 0.0312 0.2584 6.8 7d5t:RJ, 6lqs:RJ, 6lqt:RJ
25 7suk:SI 802 89 0.0659 0.0287 0.2584 6.9 7d63:RJ, 6ke6:RJ, 6lqp:RJ, 6lqq:RJ, 6lqr:RJ, 6lqu:RJ, 6lqv:RJ, 5wlc:SI
26 6k32:A 1208 58 0.0487 0.0141 0.2931 7.0 3jb7:A, 6ty9:A, 6tz1:A, 6tz2:A
27 7ajt:CL 781 89 0.0659 0.0294 0.2584 7.0 7d5s:RJ, 6zqa:CL, 6zqb:CL, 6zqc:CL
28 7wtl:CL 610 89 0.0659 0.0377 0.2584 7.3 5wyj:B1, 5wyk:B1
29 4ks0:A 466 27 0.0372 0.0279 0.4815 7.8
30 3qv9:B 394 27 0.0372 0.0330 0.4815 8.4
31 4ks0:B 499 27 0.0372 0.0261 0.4815 8.5
32 7aju:CL 808 89 0.0659 0.0285 0.2584 8.6 6zqd:CL, 6zqe:CL, 6zqf:CL, 6zqg:CL

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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