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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MQNPVATVLLLQGDLYCSPNCLATFQDQARRDSFGIQSKVALKTFAAADQREAEGRDLRTAYNEIATDIGRSQQINENII
KYPPGNHVLSGGLMTPFHALAHGMFGLGAPLTFPIQNVGLNVDIRGIPDVMNVIQSARPVGTSSLDVNFAYDVGKDSNAS
WLTLGNITLRLVGTIDKNASGAWTFSGEIRAFNDVYDANPSNHRGWLGENLTSLLSAVPFTSYSIEIPGSLPVTVSGNLE
HH

The query sequence (length=242) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4fzm:A 276 239 0.9876 0.8659 1.0000 2.29e-178 4fzl:A, 4fzl:B
2 4g75:A 292 163 0.2727 0.2260 0.4049 1.66e-34
3 4n58:A 266 155 0.2397 0.2180 0.3742 1.07e-29 4n58:B, 4n59:A, 4n59:B
4 8jc1:A 267 222 0.3058 0.2772 0.3333 1.13e-28 8jc1:B, 8jc1:C, 8jc1:D
5 3da3:A 270 149 0.2314 0.2074 0.3758 1.04e-25 3da3:B, 2xmx:A, 2xmx:B
6 3k3w:B 551 138 0.1405 0.0617 0.2464 2.6 3ml0:B
7 1d7r:A 431 44 0.0579 0.0325 0.3182 4.6 1d7s:A, 1d7u:A, 1d7v:A, 1dgd:A, 1dge:A, 1dka:A, 2dkb:A, 1m0n:A, 1m0o:A, 1m0p:A, 1m0q:A, 1z3z:A, 1zc9:A, 1zob:A, 1zod:A
8 8b6j:E 245 94 0.1074 0.1061 0.2766 6.0 8b6j:e, 8bqs:E, 8bqs:e, 8gym:qE, 8gym:qe, 8gym:QE, 8gym:Qe, 8gzu:qE, 8gzu:qe, 8gzu:QE, 8gzu:Qe, 7tgh:3E
9 6tm5:P 492 51 0.0579 0.0285 0.2745 6.4
10 8h3v:A 1077 73 0.0868 0.0195 0.2877 9.8 8h40:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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