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BioLiP
>protein
MQNLNVGLIGGGFMGKAHSLAYAAMPMFFWPAPALPVRKVIAEANPELAAEAARRFGFENSTSDWRSIIDDPDIHVVDIA
TPNHLHAEIAIAAAEAGKHIICEKPLARTGEESKAMYDAVKDKNIVHMVAFNYRRTPAVALAKKYIEEGAIGRILSFRGT
YLQDWSADPNSPLSWRFQKSIAGSGALGDIATHVIDMARYLVGEFSAVNAVLSTWIPERPLGPKGPVDVDDEVMTMIRFA
NGAVGSVEATRNAHGRNNYITFEIHGTEGSIVFNYERRDELQVAFASDQADRRGFRTVYTGPAHPYGEGLWPIPALGIGY
GETKIIEAHDFFKAIAEGGSVSPSFADGYQVALIDDAIVESAAKESWVDVPQI

The query sequence (length=373) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6a3j:C 378 376 0.9946 0.9815 0.9867 0.0 6a3g:A, 6a3g:B, 6a3g:C, 6a3g:D, 6a3i:A, 6a3i:B, 6a3i:C, 6a3i:D, 6a3j:A, 6a3j:B, 6a3j:D
2 6ktk:C 368 360 0.3673 0.3723 0.3806 1.22e-67 6ktk:A, 6ktk:B, 6ktk:D, 6ktl:A, 6ktl:B, 6ktl:C, 6ktl:D, 5ya8:A, 5ya8:B, 5ya8:C, 5ya8:D, 5yap:A, 5yap:B, 5yap:C, 5yap:D, 5yaq:A, 5yaq:B, 5yaq:C, 5yaq:D
3 6jw7:A 342 271 0.2091 0.2281 0.2878 3.84e-26 6jw6:A, 6jw6:B, 6jw7:B, 6jw8:A, 6jw8:B
4 2glx:A 332 231 0.1930 0.2169 0.3117 1.83e-25 2glx:B, 2glx:C, 2glx:D, 2glx:E, 2glx:F
5 5a03:C 336 194 0.1769 0.1964 0.3402 2.55e-24 5a02:A, 5a02:B, 5a02:C, 5a02:D, 5a02:E, 5a02:F, 5a03:A, 5a03:B, 5a03:D, 5a03:E, 5a03:F, 5a04:A, 5a04:B, 5a04:C, 5a04:D, 5a04:E, 5a04:F, 5a05:A, 5a05:C, 5a05:D, 5a05:E, 5a05:B, 5a05:F, 5a06:A, 5a06:B, 5a06:C, 5a06:D, 5a06:E, 5a06:F
6 1h6d:A 383 213 0.1850 0.1802 0.3239 5.54e-23 1evj:A, 1evj:B, 1evj:C, 1evj:D, 1h6a:A, 1h6a:B, 1h6b:A, 1h6b:B, 1h6c:A, 1h6c:B, 1h6d:C, 1h6d:B, 1h6d:D, 1h6d:E, 1h6d:G, 1h6d:F, 1h6d:H, 1h6d:I, 1h6d:K, 1h6d:J, 1h6d:L, 1ofg:A, 1ofg:D, 1ofg:B, 1ofg:C, 1ofg:E, 1ofg:F, 1ryd:A, 1ryd:B, 1rye:A, 1rye:D, 1rye:B, 1rye:C
7 3e18:A 348 288 0.2332 0.2500 0.3021 2.63e-21 3e18:B
8 7xre:C 363 202 0.1528 0.1570 0.2822 5.00e-21 7xr9:A, 7xr9:B, 7xr9:C, 7xr9:D, 7xr9:E, 7xr9:F, 7xre:A, 7xre:B, 7xre:D, 7xre:E, 7xre:F
9 6o15:A 355 274 0.2038 0.2141 0.2774 2.47e-19 6o15:B
10 3q2k:K 322 233 0.1850 0.2143 0.2961 7.78e-19 3q2k:E, 3q2k:L, 3q2k:P
11 3q2k:C 347 233 0.1850 0.1988 0.2961 1.21e-18 3q2k:A, 3q2k:B, 3q2k:D, 3q2k:F, 3q2k:G, 3q2k:H, 3q2k:I, 3q2k:J, 3q2k:M, 3q2k:N, 3q2k:O
12 6nor:A 349 240 0.1769 0.1891 0.2750 2.81e-18 6nor:B, 6nor:C, 6nor:D, 6nor:E, 6nor:F
13 7d5m:A 389 233 0.1689 0.1620 0.2704 1.09e-17 7d5n:A, 7d5n:B
14 4koa:A 333 219 0.1635 0.1832 0.2785 6.45e-17
15 3cea:A 342 323 0.2091 0.2281 0.2415 8.96e-17 3cea:B, 3cea:C, 3cea:D
16 5uhw:A 342 377 0.2413 0.2632 0.2387 3.03e-15 5uhw:B, 5uhz:A, 5uhz:B, 5ui9:A, 5ui9:B, 5uia:A, 5uia:B, 5uib:A, 5uib:B
17 6z3c:AAA 379 241 0.1635 0.1609 0.2531 1.59e-14 6z3b:A, 6z3b:B, 6z3c:BBB
18 3q2i:A 345 232 0.1609 0.1739 0.2586 4.27e-14
19 7x2y:A 342 187 0.1314 0.1433 0.2620 2.34e-13 7x1x:A, 7x1x:B, 7x2y:B
20 1zh8:A 325 257 0.1769 0.2031 0.2568 3.33e-13 1zh8:B
21 8tdi:G 386 281 0.1716 0.1658 0.2278 6.91e-13 8tdi:L, 8tdi:J, 8tdi:A, 8tdi:C, 8tdi:D, 8tdi:E, 8tdi:F, 8tdi:H, 8tdi:I, 8tdi:B, 8tdi:K
22 4n54:A 340 276 0.1930 0.2118 0.2609 3.23e-12 4n54:B, 4n54:C, 4n54:D
23 5b3u:B 317 277 0.1850 0.2177 0.2491 4.07e-12 5b3v:B, 5b3v:A, 5b3v:C, 5b3v:D
24 3dty:A 374 229 0.1475 0.1471 0.2402 7.05e-12 3dty:E
25 3rc1:A 325 173 0.1314 0.1508 0.2832 2.26e-11 3rbv:A, 3rc2:A, 3rc7:A, 3rc9:A, 3rcb:A
26 3ec7:A 336 162 0.1287 0.1429 0.2963 1.69e-10 3ec7:B, 3ec7:C, 3ec7:D, 3ec7:E, 3ec7:F, 3ec7:G, 3ec7:H
27 2o4u:X 331 235 0.1367 0.1541 0.2170 1.50e-09 2poq:X
28 4min:A 339 211 0.1582 0.1740 0.2796 2.80e-09 4min:B, 4min:C, 4min:D, 4mio:A, 4mio:B, 4mio:C, 4mio:D, 4miy:A, 4miy:B, 4miy:C, 4miy:D, 4mjl:A, 4mjl:B, 4mjl:C, 4mjl:D
29 9azo:A 315 99 0.0858 0.1016 0.3232 3.50e-09 9azo:B, 9azo:C, 9azo:D, 9azo:E, 9azo:F
30 8qc8:B 367 210 0.1394 0.1417 0.2476 2.82e-07 8qc2:A, 8qc2:B, 8qc2:C, 8qc2:D, 8qc8:C, 8qc8:A
31 8qc8:D 339 209 0.1367 0.1504 0.2440 1.18e-06
32 8tdf:A 452 187 0.1233 0.1018 0.2460 8.43e-06 8tdf:B, 8tdf:C, 8tdf:D, 8tdh:B, 8tdh:C, 8tdh:D, 8tdh:A
33 3oa2:B 311 139 0.0965 0.1158 0.2590 1.05e-05 3oa2:A, 3oa2:C, 3oa2:D
34 3m2t:A 342 132 0.0885 0.0965 0.2500 1.22e-05 3m2t:B
35 8qc6:A 366 211 0.1287 0.1311 0.2275 4.12e-05 8qc3:A, 8qc3:B, 8qc5:A, 8qc5:B, 8qc6:B
36 4l8v:A 337 384 0.2440 0.2700 0.2370 3.23e-04 4l8v:B, 4l8v:C, 4l8v:D, 3nt2:A, 3nt2:B, 3nt4:A, 3nt4:B, 3nt5:A, 3nt5:B, 3ntq:A, 3ntq:B, 3ntr:A, 3ntr:B
37 7bvj:A 313 158 0.0992 0.1182 0.2342 3.68e-04 7bvj:B, 7bvj:C, 7bvj:D, 7bvk:A, 7bvk:B
38 4nhe:B 326 151 0.1153 0.1319 0.2848 0.001 4nhe:A, 4nhe:C
39 2ixa:A 426 110 0.0858 0.0751 0.2909 0.002 2ixb:A
40 6t2b:B 439 110 0.0751 0.0638 0.2545 0.011 6t2b:A, 6t2b:C, 6t2b:D
41 7cgq:A 306 96 0.0697 0.0850 0.2708 0.015 7cgq:B, 7cgq:C, 7cgq:D, 7cgr:A, 7cgr:B, 7cgr:C, 7cgr:D, 6jnk:A, 6jnk:B, 6jnk:C, 6jnk:D
42 3o9z:A 310 153 0.1099 0.1323 0.2680 0.019 3o9z:B, 3o9z:C, 3o9z:D, 3oa0:A, 3oa0:B, 3oa0:C, 3oa0:D
43 7wbm:A 415 95 0.0751 0.0675 0.2947 1.7 7w3s:A, 7w3s:B, 7w3s:C, 7w3s:D, 7wbm:B
44 3tcf:A 517 63 0.0483 0.0348 0.2857 3.0 3tcf:B, 3tcf:C, 3tcf:D, 3tcf:E, 3tcf:F, 3tcf:G, 3tcf:H, 3tcg:A, 3tcg:B, 3tcg:C, 3tcg:D, 3tcg:E, 3tcg:F, 3tcg:G, 3tcg:H
45 7uww:A 632 50 0.0349 0.0206 0.2600 4.6 7uwu:A, 7uwu:B, 7uwv:A, 7uww:B
46 8iuf:V1 504 80 0.0643 0.0476 0.3000 6.4 8j9h:V1, 8j9i:V1, 8j9j:V1
47 2cwf:B 337 109 0.0751 0.0831 0.2569 8.7 2cwf:A, 2cwh:A, 2cwh:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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