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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MQNITQSWFVQGMIKATTDAWLKGWDERNGGNLTLRLDDADIAPYHDNFHQQPRYIPLSQPMPLLANTPFIVTGSGKFFR
NVQLDPAFNLGIVKVDSDGAGYHILWGLTNEAVPTSELPAHFLSHCERIKATNGKDRVIMHCHATNLIALTYVLENDTAV
FTRQLWEGSTECLVVFPDGVGILPWMVPGTDAIGQATAQEMQKHSLVLWPFHGVFGSGPTLDETFGLIDTAEKSAQVLVK
VYSMGGMKQTISREELIALGKRFGVTPLASALAL

The query sequence (length=274) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1gt7:A 274 274 0.9927 0.9927 0.9927 0.0 1gt7:B, 1gt7:C, 1gt7:D, 1gt7:E, 1gt7:F, 1gt7:G, 1gt7:H, 1gt7:I, 1gt7:J, 1gt7:K, 1gt7:L, 1gt7:M, 1gt7:N, 1gt7:O, 1gt7:P, 1gt7:Q, 1gt7:R, 1gt7:S, 1gt7:T, 1ojr:A, 2uyu:A, 2uyu:E, 2uyv:A, 2uyv:B, 2uyv:C, 2uyv:D, 2v29:B, 2v29:A, 2v2a:A, 2v2b:A, 2v9e:A, 2v9e:B, 2v9f:A, 2v9g:A, 2v9g:B, 2v9g:C, 2v9g:D, 2v9i:A, 2v9i:B, 2v9l:A, 2v9m:A, 2v9m:B, 2v9n:A, 2v9n:B, 2v9n:C, 2v9n:D, 2v9o:A, 2v9o:E
2 6voq:A 207 106 0.1022 0.1353 0.2642 0.012
3 7xsh:A 548 107 0.1022 0.0511 0.2617 0.13 7xsh:B
4 6btg:A 207 190 0.1496 0.1981 0.2158 0.88 6btd:A
5 3g0i:A 385 37 0.0584 0.0416 0.4324 3.1 3g0i:B
6 7w46:B 402 47 0.0547 0.0373 0.3191 3.2
7 3w3w:A 1028 66 0.0730 0.0195 0.3030 3.2 5h2v:A, 3w3x:A, 3w3y:A, 4zj7:A
8 5trd:A 219 64 0.0584 0.0731 0.2500 3.4 5trd:B
9 8p5s:A 1087 22 0.0438 0.0110 0.5455 4.7 8p5x:A, 8p5x:B, 8p5x:C, 8p5x:D, 8p5x:E, 8p5x:F
10 8p5v:A 1121 22 0.0438 0.0107 0.5455 4.9 8p5t:A, 8p5t:B, 8p5t:C, 8p5t:D, 8p5t:E, 8p5t:F, 8p5u:A, 8p5u:B, 8p5u:C, 8p5u:D, 8p5u:E, 8p5u:F, 8p5v:B, 8p5v:E, 8p5v:D, 8p5v:C, 8p5v:F, 8p5w:A, 8p5w:B, 8p5w:C, 8p5w:D, 8p5w:E, 8p5w:F
11 8jtr:A 1056 108 0.1131 0.0294 0.2870 6.2
12 2cuz:A 468 22 0.0365 0.0214 0.4545 6.9 2cv0:A, 2cv0:B, 2cv1:A, 2cv1:B, 2cv2:A, 2cv2:B, 2dxi:A, 2dxi:B, 1g59:A, 1g59:C, 1j09:A, 1n75:A, 1n77:A, 1n77:B, 1n78:A, 1n78:B
13 5ouo:A 263 94 0.0949 0.0989 0.2766 7.1
14 8uza:A 910 99 0.1058 0.0319 0.2929 7.5 8uzb:A
15 8jtj:A 1042 99 0.1058 0.0278 0.2929 7.6
16 8fvy:Y 122 31 0.0401 0.0902 0.3548 8.1 8br8:Sb, 8brm:Sb, 8bsi:Sb, 8bsj:Sb, 8btd:Sb, 8btr:Sb, 8g4s:Y, 7pwf:Y, 7pwo:Y1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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