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BioLiP
>protein
MQLRFARLSEHATAPTRRAAGYDLYSAYDYTIPPMEKAVVKTDIQIALPSGCYGRVAPRSGLAAKHFIDVGAGVIDEDYR
GNVGVVLFNFGKEKFEVKKGDRIAQLICERIFYPEIEEVQALDDTERGSGGFGSTGKN

The query sequence (length=138) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6ljj:A 150 129 0.8696 0.8000 0.9302 4.29e-85 3ara:A, 3ara:C, 3ara:B, 3arn:A, 3arn:C, 3arn:B, 3ehw:A, 3ehw:B, 3ehw:C, 3ehw:X, 3ehw:Y, 3ehw:Z, 5h4j:A, 2hqu:A, 2hqu:B, 2hqu:C
2 6mjk:A 144 136 0.6087 0.5833 0.6176 1.88e-56
3 2ol1:C 125 123 0.5652 0.6240 0.6341 4.62e-53 2oke:A, 2oke:C, 2oke:B, 2ol1:A, 2ol1:B
4 4oop:B 142 137 0.6014 0.5845 0.6058 2.00e-52 4oop:A, 4oop:C
5 5f9k:B 130 127 0.5290 0.5615 0.5748 8.23e-45 5f9k:A, 5f9k:C
6 3f4f:A 138 137 0.5217 0.5217 0.5255 8.98e-43 3f4f:B, 3f4f:C, 3p48:A, 3p48:C, 3p48:B
7 8hrv:B 145 141 0.3913 0.3724 0.3830 8.43e-28 8hrv:A, 8hrv:C
8 5cct:A 169 165 0.4058 0.3314 0.3394 6.35e-26 5cco:A, 5nyz:A, 5nz2:A, 3zez:A, 3zf0:A, 3zf1:A, 3zf4:A, 3zf5:A, 3zf6:A
9 7n6s:C 147 139 0.4348 0.4082 0.4317 7.92e-26 7n6s:A, 7n6s:B, 7n6s:F, 7n6s:D, 7n6s:E
10 1f7r:A 133 117 0.3188 0.3308 0.3761 2.47e-22 1f7k:A, 1f7k:B, 1f7n:A, 1f7n:B, 1f7p:A, 1f7p:C, 1f7p:B, 1f7q:A, 1f7q:C, 1f7q:B
11 5y5p:D 171 160 0.4203 0.3392 0.3625 1.49e-21 5y5p:A, 5y5p:B, 5y5p:C, 5y5p:E, 5y5p:F, 5y5q:A, 5y5q:B, 5y5q:C
12 4gcy:A 163 141 0.3841 0.3252 0.3759 1.72e-21 8cga:A, 5ect:A, 5edd:A, 3h6d:A, 3hza:A, 3i93:A, 3loj:A, 2py4:A, 1six:A, 1sjn:A, 1sjn:C, 1sjn:B, 1sm8:A, 1sm8:B, 1sm8:C, 1smc:A, 1smc:B, 1smc:C, 1snf:A, 1snf:C, 1snf:B
13 4wrk:A 158 152 0.3406 0.2975 0.3092 1.27e-20 4gv8:A, 4gv8:C, 4gv8:B, 4gv8:D, 4gv8:F, 4gv8:E, 4wrk:B, 4wrk:C, 4wrk:D, 4wrk:E, 4wrk:F
14 6hde:B 152 132 0.3551 0.3224 0.3712 2.75e-19 1eu5:A, 1euw:A, 6hde:A, 6hde:C, 2hrm:A, 1rn8:A, 1rnj:A, 1seh:A, 1syl:A
15 2y8c:C 136 136 0.3116 0.3162 0.3162 5.40e-15 2y8c:B
16 4aoo:A 143 143 0.3768 0.3636 0.3636 4.94e-13 4ao5:A, 4ao5:B, 4ao5:C, 4ao5:D, 4ao5:E, 4ao5:F, 4aoo:B, 4aoo:C, 4aoo:D, 4aoz:A, 4aoz:B, 4aoz:C, 4apz:1, 4apz:Y, 4apz:2, 4apz:3, 4apz:4, 4apz:5, 4apz:7, 4apz:6, 4apz:8, 4apz:9, 4apz:a, 4apz:A, 4apz:C, 4apz:B, 4apz:D, 4apz:E, 4apz:F, 4apz:G, 4apz:I, 4apz:H, 4apz:J, 4apz:K, 4apz:L, 4apz:M, 4apz:N, 4apz:O, 4apz:P, 4apz:R, 4apz:Q, 4apz:S, 4apz:U, 4apz:T, 4apz:V, 4apz:W, 4apz:X, 4apz:Z, 4apz:b, 4apz:d, 4apz:c, 4apz:e, 4apz:g, 4apz:f, 4apz:h, 4apz:j, 4apz:i, 4apz:k, 4apz:m, 4apz:l, 4b0h:A, 4b0h:B, 4b0h:C, 2xce:A, 2xce:B, 2xce:C, 2xce:D, 2xce:E, 2xce:F, 2xy3:A, 2xy3:B, 2xy3:C, 2xy3:D, 2xy3:E, 2xy3:F
17 3t64:A 153 127 0.2971 0.2680 0.3228 2.96e-10 3t60:A, 3t60:B, 3t60:C, 3t64:B, 3t64:C, 3t6y:A, 3t6y:B, 3t6y:C, 3t70:A, 3t70:B, 3t70:C, 1vyq:A, 1vyq:B, 1vyq:C, 2y8c:A
18 6mao:A 137 113 0.2899 0.2920 0.3540 1.24e-09
19 3tp1:A 114 103 0.2536 0.3070 0.3398 1.15e-06 2d4n:A, 3tpn:A, 3tps:A, 3tpw:A, 3tpy:A, 3tq3:A, 3tq4:A, 3tq5:A, 3trl:A, 3trn:A, 3ts6:A, 3tsl:A, 3tta:A
20 6lj3:A 164 134 0.2319 0.1951 0.2388 1.65e-05 6ky9:A, 6ky9:B, 6ky9:C, 6kz6:C, 6kz6:B, 6kz6:A, 6lis:A, 6lis:B, 6lis:C, 6lis:D, 6lis:F, 6lis:E, 6lj3:C, 6lj3:B
21 4xjc:A 177 101 0.2029 0.1582 0.2772 1.14e-04 4xjc:E, 4xjc:C, 4xjc:B, 4xjc:F, 4xjc:D
22 6yxx:BQ 218 37 0.1159 0.0734 0.4324 0.81 7aoi:BQ, 6hiv:BQ, 6hix:BQ, 6yxy:BQ
23 5aj4:B1 244 42 0.1377 0.0779 0.4524 2.7 4ce4:1, 6gaw:B1, 6gb2:B1, 7nqh:B1, 7nql:B1, 7nsh:B1, 7nsi:B1, 7nsj:B1, 8oin:BE, 8oiq:BE, 4v19:1, 6ydp:B1, 6ydw:B1
24 2x1e:A 354 34 0.1087 0.0424 0.4412 3.3
25 8any:X 244 50 0.1377 0.0779 0.3800 5.1 7a5f:X3, 7a5g:X3, 7a5h:X, 7a5i:X3, 7a5j:X, 7a5k:X3, 6i9r:X, 3j7y:X, 3j9m:X, 8k2a:Lb, 8k2b:Lb, 7l08:X, 7l20:X, 6nu2:X, 6nu3:X, 7o9k:X, 7o9m:X, 7odr:X, 7ods:X, 7odt:X, 7of0:X, 7of2:X, 7of3:X, 7of4:X, 7of5:X, 7of6:X, 7of7:X, 7og4:XX, 7oi6:X, 7oi7:X, 7oi8:X, 7oi9:X, 7oia:X, 7oib:X, 7oic:X, 7oid:X, 7oie:X, 8oir:BE, 8oit:BE, 5ool:X, 5oom:X, 7pd3:X, 8pk0:X, 7po4:X, 7qh6:X, 7qh7:X, 7qi4:X, 7qi5:X, 7qi6:X, 8qsj:X, 8qu1:X, 8qu5:X, 6vlz:X, 6vmi:X, 8xt0:Lb, 8xt1:Lb, 8xt2:Lb, 8xt3:Lb, 6zm5:X, 6zm6:X, 6zs9:XX, 6zsa:XX, 6zsb:XX, 6zsc:XX, 6zsd:XX, 6zse:XX, 6zsg:XX
26 7aih:BH 214 37 0.0942 0.0607 0.3514 6.6 7am2:BH, 7ane:BH
27 6v55:A 746 58 0.1304 0.0241 0.3103 7.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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