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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MQLNNRDLKSIIDNEALAYAMYTVENRAIPNMIDGFKPVQRFVIARALDLARGNKDKFHKLASIAGGVADLGYHHGENSA
QDAGALMANTWNNNFPLLDGQGNFGSRTVQKAAASRYIFARVSKNFYNVYKDTEYAPVHQDKEHIPPAFYLPIIPTVLLN
GVSGIATGYATYILPHSVSSVKKAVLQALQGKKVTKPKVEFPEFRGEVVEIDGQYEIRGTYKFTSRTQMHITEIPYKYDR
ETYVSKILDPLENKGFITWDDACGEHGFGFKVKFRKEYSLSDNEEERHAKIMKDFGLIERRSQNITVINEKGKLQVYDNV
VDLIKDFVEVRKTYVQKRIDNKIKETESAFRLAFAKAHFIKKVISGEIVVQGKTRKELTEELSKIDMYSSYVDKLVGMNI
FHMTSDEAKKLAEEAKAKKEENEYWKTTDVVTEYTKDLEEI

The query sequence (length=441) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8yo4:A 442 441 1.0000 0.9977 1.0000 0.0 8ylu:A, 8ylu:B, 8yo4:B, 8yo7:A, 8yo7:B, 8yon:A, 8yon:B
2 4gfh:A 1102 425 0.2766 0.1107 0.2871 1.28e-38 4gfh:F, 3l4j:A, 3l4k:A, 1pvg:A, 1pvg:B, 1qzr:A, 1qzr:B, 2rgr:A
3 6zy7:B 1160 371 0.2472 0.0940 0.2938 3.16e-36 4fm9:A, 5gwk:A, 5gwk:B, 4r1f:B, 4r1f:C, 4r1f:D, 1zxm:A, 1zxm:B, 1zxn:B, 1zxn:C, 1zxn:D, 6zy5:B, 6zy5:A, 6zy6:A, 6zy6:B, 6zy7:A, 6zy8:A, 6zy8:B
4 8gcc:A 707 452 0.2857 0.1782 0.2788 4.24e-36 8gcc:B
5 5gwj:A 677 422 0.2540 0.1654 0.2654 1.19e-35 4g0u:A, 4g0u:B, 4g0v:A, 4g0v:B, 4g0w:A, 4g0w:B, 5gwi:A, 5gwi:B, 5gwj:B, 4j3n:A, 4j3n:B, 3qx3:A, 3qx3:B, 5zrf:A, 5zrf:B
6 7yq8:A 730 424 0.2540 0.1534 0.2642 3.63e-35 7yq8:B, 5zad:A, 5zad:B, 5zen:A, 5zqf:A
7 5eix:J 679 438 0.2562 0.1664 0.2580 1.94e-30 5eix:G, 7lhz:D
8 6waa:H 656 437 0.2517 0.1692 0.2540 3.55e-30 6waa:D
9 2xkk:C 711 378 0.2268 0.1406 0.2646 1.41e-29 2xkk:A
10 7lhz:C 714 447 0.2585 0.1597 0.2550 2.31e-29 5eix:A, 5eix:B, 7lhz:A, 6waa:B, 6waa:F
11 7lhz:B 631 432 0.2426 0.1696 0.2477 1.04e-28
12 2xcr:D 719 390 0.2404 0.1474 0.2718 2.61e-28 8bp2:AAA, 8bp2:CCC, 5cdm:A, 5cdm:C, 5cdn:C, 5cdn:A, 5cdn:T, 5cdn:R, 5cdo:A, 5cdo:C, 5cdo:R, 5cdo:T, 5cdp:A, 5cdp:C, 5cdq:A, 5cdq:C, 5cdq:R, 5cdq:T, 5cdr:A, 5cdr:C, 6fqm:A, 6fqm:C, 6fqm:a, 6fqm:c, 6fqs:A, 6fqs:C, 6fqv:A, 6fqv:C, 6fqv:R, 6fqv:T, 5iwi:A, 5iwi:C, 5iwm:A, 5iwm:C, 6qtk:A, 6qtk:C, 6qtp:A, 6qtp:C, 6qx1:A, 6qx1:C, 6qx2:A, 6qx2:C, 6qx2:J, 6qx2:L, 6qx2:R, 6qx2:T, 6qx2:a, 6qx2:c, 6qx2:j, 6qx2:l, 6qx2:r, 6qx2:t, 2xcr:B, 2xcr:S, 2xcr:U
13 7mvs:B 675 390 0.2404 0.1570 0.2718 3.45e-28 8bp2:BBB, 8bp2:DDD, 5bs3:B, 5bs3:D, 4bul:A, 4bul:C, 5cdm:B, 5cdm:D, 5cdn:D, 5cdn:B, 5cdn:U, 5cdn:S, 5cdo:B, 5cdo:D, 5cdo:S, 5cdo:U, 5cdp:B, 5cdp:D, 5cdq:B, 5cdq:D, 5cdq:S, 5cdq:U, 5cdr:B, 5cdr:D, 6fm4:B, 6fm4:D, 6fqm:D, 6fqs:B, 6fqs:D, 6fqv:B, 6fqv:D, 6fqv:S, 6fqv:U, 7fvs:A, 7fvs:B, 7fvt:A, 7fvt:B, 5iwi:B, 5iwi:D, 5iwm:B, 5iwm:D, 7mvs:A, 5npk:B, 5npk:D, 5npk:b, 5npk:d, 5npp:B, 5npp:D, 4plb:B, 4plb:D, 6qtk:B, 6qtk:D, 6qtp:B, 6qtp:D, 6qx1:B, 6qx1:D, 6qx2:B, 6qx2:D, 6qx2:K, 6qx2:M, 6qx2:S, 6qx2:U, 6qx2:b, 6qx2:d, 6qx2:k, 6qx2:m, 6qx2:s, 6qx2:u, 2xcs:B, 2xcs:D, 2xct:B, 2xct:D, 2xct:S, 2xct:U, 6z1a:B, 6z1a:D
14 4z2c:A 485 290 0.1950 0.1773 0.2966 1.92e-25 6n1p:A, 6n1p:G, 6n1p:B, 4z2c:B, 4z2d:A, 4z2d:B, 4z2e:A, 4z2e:B
15 6gau:A 1088 394 0.2200 0.0892 0.2462 3.75e-25 5bs8:A, 5bs8:B, 5bs8:C, 5bs8:D, 5bta:A, 5bta:B, 5bta:C, 5bta:D, 5btc:A, 5btc:B, 5btc:C, 5btc:D, 5btd:A, 5btd:B, 5btd:C, 5btd:D, 5btf:A, 5btf:B, 5btf:C, 5btf:D, 5btg:A, 5btg:B, 5btg:C, 5btg:D, 5bti:A, 5bti:B, 5bti:C, 5bti:D, 5btl:A, 5btl:B, 5btl:C, 5btl:D, 5btn:A, 5btn:B, 5btn:C, 5btn:D, 9foy:A, 9foy:B, 6gau:B, 7ugw:A, 7ugw:B, 7ugw:C, 7ugw:D
16 8qdx:C 837 380 0.2245 0.1183 0.2605 5.19e-24 9gbv:A, 9gbv:C, 9ggq:C, 9ggq:A, 8qdx:A, 8qqi:A, 8qqi:C, 8qqs:A, 8qqs:C, 8qqu:C, 6rks:C, 6rks:A, 6rku:C, 6rku:A, 6rkv:C, 6rkv:A, 6rkw:C, 6rkw:A, 4tma:E, 2y3p:A, 2y3p:B, 7z9c:A, 7z9c:C, 7z9g:A, 7z9g:C, 7z9k:A, 7z9k:C, 7z9m:A, 7z9m:C
17 2xco:A 636 379 0.2290 0.1588 0.2665 1.04e-23
18 8c41:A 720 304 0.1973 0.1208 0.2862 4.34e-23 8c41:B
19 4i3h:A 1037 304 0.1973 0.0839 0.2862 6.18e-23 3foe:D, 3foe:C, 3fof:C, 3fof:D, 4i3h:B, 4juo:A, 4juo:C, 3k9f:A, 3k9f:C, 3k9f:D, 3k9f:B, 4koe:A, 4koe:C, 4koe:D, 4koe:B, 4kpe:A, 4kpe:C, 4kpe:D, 4kpe:B, 4kpf:A, 4kpf:C, 4kpf:D, 4kpf:B, 3ksa:A, 3ksa:C, 3ksa:D, 3ksa:B, 3ksb:A, 3ksb:B, 3ksb:C, 3ksb:D, 3ltn:A, 3ltn:C, 3ltn:D, 3ltn:B, 3rad:A, 3rad:C, 3rad:D, 3rad:B, 3rae:A, 3rae:C, 3rae:D, 3rae:B, 3raf:A, 3raf:C, 3raf:D, 3raf:B, 4z3o:B, 4z3o:A, 4z4q:A, 4z4q:B, 4z53:A, 4z53:B
20 4ckl:A 450 235 0.1610 0.1578 0.3021 8.70e-19
21 3fof:A 435 241 0.1519 0.1540 0.2780 1.11e-13 3foe:A, 3foe:B, 3fof:B
22 8kgn:A 1190 257 0.1519 0.0563 0.2607 4.11e-10 8j9v:A, 8j9v:B, 8j9w:B, 8j9w:A, 8j9x:A, 8j9x:B, 8ja1:A, 8ja2:A, 8kgm:A, 8kgm:B, 8kgn:B, 8kgq:A, 8kgq:B, 8kgr:A, 8kgr:B, 8kgs:A, 8kgt:A, 8wwo:A, 8wwo:B, 8wwo:C, 8wwo:D, 8xrf:A, 8xrf:B, 8xrg:A, 8xrh:A, 8xri:A, 8xri:B, 8yge:A, 8yge:B
23 6s0v:B 284 100 0.0680 0.1056 0.3000 0.69 7cl3:A, 7cl3:B, 7cl3:C, 7cl3:D, 7cl3:E, 7cl3:F, 7cl5:A, 7cl5:B, 7cl5:C, 7cl5:D, 7cl5:E, 7cl5:F, 7cl6:A, 7cl6:B, 7cl6:C, 7cl6:D, 7cl6:E, 7cl6:F, 6s0s:A, 6s0s:B, 6s0s:C, 6s0s:D, 6s0s:E, 6s0s:F, 6s0u:A, 6s0u:B, 6s0u:C, 6s0u:D, 6s0u:E, 6s0u:F, 6s0v:A, 6s0v:C, 6s0v:D, 6s0v:E, 6s0v:F, 6s0w:A, 6s0w:B, 6s0w:C, 6s0w:D, 6s0w:E, 6s0w:F
24 6p55:B 327 39 0.0363 0.0489 0.4103 0.88 6p52:A, 6p53:B, 6p54:A, 6p54:B, 6p55:A, 6xqv:A, 6xqv:B
25 5a0t:A 454 67 0.0363 0.0352 0.2388 1.4 5a0t:B, 5a0v:A, 5a0v:B
26 3wdr:A 330 52 0.0340 0.0455 0.2885 2.5
27 2w16:B 754 49 0.0385 0.0225 0.3469 2.9 2iah:A, 2w6t:B, 2w6u:B, 2w76:B, 2w77:B, 2w78:B, 1xkh:A, 1xkh:B, 1xkh:C
28 7cep:A 414 115 0.0703 0.0749 0.2696 6.7 7ceo:A, 7cer:A, 7ces:A, 7e6b:A, 7e6c:A, 7e6e:A, 7e6f:A, 5j8q:A, 6kfz:A, 7xej:A, 7xek:A, 7xen:A, 7xep:A, 7xet:A, 5xt5:A, 5xt5:B, 5xt6:A, 5xt6:B, 5zsk:A, 5zso:A
29 5t96:B 330 73 0.0476 0.0636 0.2877 9.4 5t96:A, 5t96:C, 5t96:D, 5t96:E, 5t96:F
30 6dre:A 365 115 0.0680 0.0822 0.2609 9.6 6drh:C
31 2oox:E 333 53 0.0340 0.0450 0.2830 10.0 2oox:G, 2ooy:G, 2ooy:E, 2qr1:G, 2qr1:E, 2qrc:G, 2qrc:E, 2qrd:G, 2qrd:E, 2qre:G, 2qre:E

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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