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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGEIHASAEGQDMYAAIDGLIDK
LARQLTKHKDKLKQH

The query sequence (length=95) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6h4n:x 95 95 0.9789 0.9789 0.9789 2.40e-65 6h58:x, 6h58:xx, 4v8h:AX, 4v8h:CX, 6y69:x
2 4hei:A 92 92 0.5368 0.5543 0.5543 2.18e-35 4hei:B
3 6cfk:1y 97 85 0.3579 0.3505 0.4000 4.58e-16 6cfk:2y, 6cfl:1y, 6cfl:2y, 8fc1:1y, 8fc1:2y, 8fc2:1y, 8fc2:2y, 8fc3:1y, 8fc3:2y, 8fc4:1y, 8fc4:2y, 8fc5:1y, 8fc5:2y, 8fc6:1y, 8fc6:2y, 5fdu:1x, 5fdu:2x, 5fdv:1x, 5fdv:2x, 6fkr:1z, 6fkr:2z, 7md7:1y, 7md7:2y, 7rqa:1y, 7rqa:2y, 7rqb:1y, 7rqb:2y, 7rqc:1y, 7rqc:2y, 7rqd:1y, 7rqd:2y, 7rqe:1y, 7rqe:2y, 8t8b:1y, 8t8b:2y, 8t8c:1y, 8t8c:2y, 4v4g:Aa, 4v4g:Ca, 4v4g:Ea, 4v4g:Ga, 4v4g:Ia, 4v8i:AY, 4v8i:CY, 5v8i:1y, 5v8i:2y, 8vtw:1y, 8vtw:2y, 8vty:1y, 8vty:2y, 6xhx:1y, 6xhx:2y, 4y4o:1y, 4y4o:2y
4 8uu4:w 102 97 0.3789 0.3529 0.3711 8.02e-15 8uu7:w
5 8rd8:D 105 103 0.3474 0.3143 0.3204 2.63e-14
6 5myj:A 159 98 0.4000 0.2390 0.3878 1.76e-13
7 5njt:x 104 101 0.4105 0.3750 0.3861 1.42e-12
8 6gzq:V2 121 93 0.3053 0.2397 0.3118 3.04e-11 6gzx:V3, 6gzx:V4, 6gzz:V3, 6gzz:V4
9 6fxc:Av 162 97 0.2947 0.1728 0.2887 4.49e-11 6fxc:Bv, 5nd8:v, 5nd9:v, 5ngm:Av, 6s0x:v, 6s13:v
10 6dzi:Y 103 95 0.2632 0.2427 0.2632 1.43e-04 6dzk:Y, 5zep:x
11 5mmj:y 116 104 0.2737 0.2241 0.2500 0.078 6eri:BV, 5mmm:y, 5x8p:y, 5x8r:y
12 8fmw:W 97 88 0.2421 0.2371 0.2614 0.12
13 6lsr:3 255 49 0.1684 0.0627 0.3265 1.2 6lqm:3, 6lu8:3
14 7qep:O3 109 65 0.1474 0.1284 0.2154 1.6
15 3pij:B 526 53 0.1579 0.0285 0.2830 3.3 3pij:A
16 8i70:A 658 61 0.2105 0.0304 0.3279 3.7 8a30:A, 8a7s:A, 8a8t:A, 8aer:A, 8j2a:A, 8j2b:A, 8j2d:A, 8j2e:A
17 5xwy:A 1117 38 0.1263 0.0107 0.3158 3.9
18 5xwp:A 1125 38 0.1263 0.0107 0.3158 4.0 5xwp:B
19 7fi0:A 308 25 0.1158 0.0357 0.4400 5.3 7fi1:A
20 6y4d:A 257 44 0.1368 0.0506 0.2955 5.6 6y4d:B
21 7o4t:D 403 47 0.1895 0.0447 0.3830 5.7 4b3i:C, 4b3j:C, 4b3j:D, 7o1i:D, 7o1l:D, 7o4r:C, 7o4r:D, 7o4s:C, 7o4s:D, 7o4t:C, 8opu:C, 8opu:D, 8opx:C, 8opx:D, 8opy:D, 8oql:C, 8oql:D, 8oqm:D, 8oqo:C, 8oqo:D, 8oqp:C, 8oqp:D, 8oqs:C, 8oqs:D, 8pf8:C, 8pf8:D
22 2d0f:A 637 39 0.1368 0.0204 0.3333 6.3 2d0g:A, 2d0h:A, 1izj:A, 1izk:A, 1ji1:A, 1ji1:B, 1uh2:A, 1uh3:A, 1uh4:A, 5z0t:A, 5z0t:B, 5z0u:A
23 5wtb:C 323 50 0.1684 0.0495 0.3200 8.2 5wtb:A, 5wtb:B, 5wtb:D
24 8wi7:w 255 38 0.1368 0.0510 0.3421 8.3 8whx:w, 8wi9:w, 8wib:w, 8wid:w, 8wif:w
25 7moq:C 4159 72 0.1895 0.0043 0.2500 8.7 6zyy:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218