Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MQLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQ
REFNKL

The query sequence (length=86) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4owf:B 86 86 1.0000 1.0000 1.0000 7.60e-54 9azj:A, 9azj:B, 4owf:A, 7tv4:B, 7tv4:D
2 9b0z:A 89 68 0.3372 0.3258 0.4265 3.87e-10 9b0b:A, 9b0b:B, 9b0b:C, 9b0b:D, 9b0z:B, 9b12:C, 9b12:D, 9b12:E, 9b12:F
3 2zpu:A 319 52 0.2326 0.0627 0.3846 0.68 1v71:A, 1wtc:A, 2zr8:A
4 6ahd:1 1048 41 0.1977 0.0162 0.4146 1.2 7abg:u, 7abh:u, 7abi:u, 6ah0:1, 7b0i:C, 7b91:C, 7b9c:C, 8ch6:C, 7dvq:1, 6en4:C, 7evo:1, 6ff4:u, 6ff7:u, 8h6e:2G, 8h6j:2G, 8h6k:2G, 8h6l:2G, 8hk1:1, 8i0p:1, 8i0r:1, 8i0s:1, 8i0t:1, 8i0u:1, 7omf:C, 7onb:C, 7opi:C, 7q3l:A, 7q4o:A, 7q4p:A, 8qo9:B1, 7qtt:C, 6qx9:B1, 8qxd:B1, 8qzs:B1, 8r08:B1, 8r09:B1, 8r0a:B1, 8r0b:B1, 8rm5:B1, 7vpx:1, 6y50:u, 6y5q:u, 8y7e:1, 5z56:1, 5z57:1, 5z58:1, 5zya:C
5 5gad:i 450 41 0.1512 0.0289 0.3171 2.5 4c7o:A, 4c7o:C, 5gag:i, 5gah:i, 5nco:i, 7o9g:A, 7o9i:A, 2xkv:C, 2xxa:A, 2xxa:C
6 5gaf:i 398 41 0.1512 0.0327 0.3171 2.6 1dul:A, 1hq1:A, 3lqx:A, 2pxb:A, 2pxd:A, 2pxe:A, 2pxf:A, 2pxk:A, 2pxl:A, 2pxp:A, 2pxq:A, 2pxt:A, 2pxu:A, 2pxv:A
7 2j28:9 430 40 0.1512 0.0302 0.3250 3.1 5aka:5
8 6hjg:B 376 77 0.2442 0.0559 0.2727 4.7 6hje:A, 6hje:B, 6hjf:A, 6hjf:B, 6hjg:A, 1w61:A, 1w61:B, 1w62:A
9 3n75:A 711 34 0.1279 0.0155 0.3235 4.9 3n75:D, 3n75:B, 3n75:E, 3n75:C, 6q7l:A, 6q7l:F, 6q7l:B, 6q7l:C, 6q7l:D, 6q7l:J, 6q7l:E, 6q7l:H, 6q7l:G, 6q7l:I, 6q7l:K, 6q7l:R, 6q7l:L, 6q7l:Q, 6q7l:M, 6q7l:P, 6q7l:N, 6q7l:T, 6q7l:O, 6q7l:S, 6q7m:A, 6q7m:F, 6q7m:B, 6q7m:C, 6q7m:D, 6q7m:J, 6q7m:E, 6q7m:H, 6q7m:G, 6q7m:I, 6q7m:K, 6q7m:R, 6q7m:L, 6q7m:Q, 6q7m:M, 6q7m:P, 6q7m:N, 6q7m:O, 6q7m:S, 6q7m:T
10 4hh4:C 256 61 0.1977 0.0664 0.2787 5.4 4hh4:A, 4hh4:B, 4hh4:D, 4hh4:E, 4hh4:F
11 5o8x:A 304 52 0.1744 0.0493 0.2885 6.0 4anr:A, 5o8x:B

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218