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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MQKVTGIKSVDFKIKALGHGVVNWNGPTTDNHTLPKLRGYTNLTGKQATDINFKETPLYISQNCIRHHLFRELKNVLASI
TGLIRGYVVPSSQCKRTSPLLLEDFVDQLGNGNFKTTFGDTEYISYGSISIEQLQFISLDKKFDRAAMVIKEGEGEVIAA
ELQNYIQSLNPSLNPQAIFHSNYVRRGTIFEEGECGILLNDDAVKALVAETLERLANLSIRQAKGYMYVDDITVDYNDSH
KMMRIKRDESEIINEQHAPFAQYFYAK

The query sequence (length=267) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5o7h:C 278 279 0.9925 0.9532 0.9498 0.0 5o6u:C
2 5o6u:D 315 315 1.0000 0.8476 0.8476 0.0 5o6u:E, 5o7h:D, 5o7h:E
3 8dt6:C 381 95 0.0936 0.0656 0.2632 2.0 8dt6:A, 8dt6:B, 8dt6:D
4 5t5i:A 569 31 0.0449 0.0211 0.3871 5.0 5t5i:I, 5t5m:A, 5t61:A, 5t61:G, 5t61:M, 5t61:S, 5t61:Y, 5t61:e, 5t61:k, 5t61:q
5 7lm0:A 449 124 0.1236 0.0735 0.2661 6.0 7lm0:B
6 7lld:A 446 124 0.1199 0.0717 0.2581 6.6 7lld:B, 7lle:A, 7lle:B
7 8odw:A 612 41 0.0562 0.0245 0.3659 9.1 8odw:B
8 8in6:A 205 60 0.0599 0.0780 0.2667 9.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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