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BioLiP
>protein
MQIKIKYLDETQTRINMEQGDWIDLRAAEDVAIKKDEFKLVPLGVAMELPEGYEAHVVPRSSTYKNFGVIQTNSMGVIDE
SYKGDNDFWFFPAYALRDTKIKKGDRICQFRIMKKMPAVDLIEVDRLG

The query sequence (length=128) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4aoo:A 143 129 0.9375 0.8392 0.9302 1.72e-87 4ao5:A, 4ao5:B, 4ao5:C, 4ao5:D, 4ao5:E, 4ao5:F, 4aoo:B, 4aoo:C, 4aoo:D, 4aoz:A, 4aoz:B, 4aoz:C, 4apz:1, 4apz:Y, 4apz:2, 4apz:3, 4apz:4, 4apz:5, 4apz:7, 4apz:6, 4apz:8, 4apz:9, 4apz:a, 4apz:A, 4apz:C, 4apz:B, 4apz:D, 4apz:E, 4apz:F, 4apz:G, 4apz:I, 4apz:H, 4apz:J, 4apz:K, 4apz:L, 4apz:M, 4apz:N, 4apz:O, 4apz:P, 4apz:R, 4apz:Q, 4apz:S, 4apz:U, 4apz:T, 4apz:V, 4apz:W, 4apz:X, 4apz:Z, 4apz:b, 4apz:d, 4apz:c, 4apz:e, 4apz:g, 4apz:f, 4apz:h, 4apz:j, 4apz:i, 4apz:k, 4apz:m, 4apz:l, 4b0h:A, 4b0h:B, 4b0h:C, 2xce:A, 2xce:B, 2xce:C, 2xce:D, 2xce:E, 2xce:F, 2xy3:A, 2xy3:B, 2xy3:C, 2xy3:D, 2xy3:E, 2xy3:F
2 7n6s:C 147 119 0.3125 0.2721 0.3361 2.38e-13 7n6s:A, 7n6s:B, 7n6s:F, 7n6s:D, 7n6s:E
3 8hrv:B 145 129 0.3203 0.2828 0.3178 7.06e-12 8hrv:A, 8hrv:C
4 4gcy:A 163 103 0.2656 0.2086 0.3301 6.89e-11 8cga:A, 5ect:A, 5edd:A, 3h6d:A, 3hza:A, 3i93:A, 3loj:A, 2py4:A, 1six:A, 1sjn:A, 1sjn:C, 1sjn:B, 1sm8:A, 1sm8:B, 1sm8:C, 1smc:A, 1smc:B, 1smc:C, 1snf:A, 1snf:C, 1snf:B
5 6mjk:A 144 105 0.2969 0.2639 0.3619 4.58e-10
6 3f4f:A 138 127 0.2734 0.2536 0.2756 1.36e-08 3f4f:B, 3f4f:C, 3p48:A, 3p48:C, 3p48:B
7 4oop:B 142 104 0.2656 0.2394 0.3269 5.03e-08 4oop:A, 4oop:C
8 1f7r:A 133 63 0.1875 0.1805 0.3810 4.26e-06 1f7k:A, 1f7k:B, 1f7n:A, 1f7n:B, 1f7p:A, 1f7p:C, 1f7p:B, 1f7q:A, 1f7q:C, 1f7q:B
9 6ljj:A 150 94 0.2500 0.2133 0.3404 2.05e-05 3ara:A, 3ara:C, 3ara:B, 3arn:A, 3arn:C, 3arn:B, 3ehw:A, 3ehw:B, 3ehw:C, 3ehw:X, 3ehw:Y, 3ehw:Z, 5h4j:A, 2hqu:A, 2hqu:B, 2hqu:C
10 5f9k:B 130 105 0.2344 0.2308 0.2857 5.03e-05 5f9k:A, 5f9k:C
11 6hde:B 152 65 0.1641 0.1382 0.3231 5.83e-04 1eu5:A, 1euw:A, 6hde:A, 6hde:C, 2hrm:A, 1rn8:A, 1rnj:A, 1seh:A, 1syl:A
12 6mao:A 137 91 0.1953 0.1825 0.2747 0.001
13 5cct:A 169 140 0.2891 0.2189 0.2643 0.002 5cco:A, 5nyz:A, 5nz2:A, 3zez:A, 3zf0:A, 3zf1:A, 3zf4:A, 3zf5:A, 3zf6:A
14 2ol1:C 125 105 0.2344 0.2400 0.2857 0.007 2oke:A, 2oke:C, 2oke:B, 2ol1:A, 2ol1:B
15 4wrk:A 158 63 0.1719 0.1392 0.3492 0.013 4gv8:A, 4gv8:C, 4gv8:B, 4gv8:D, 4gv8:F, 4gv8:E, 4wrk:B, 4wrk:C, 4wrk:D, 4wrk:E, 4wrk:F
16 2y8c:C 136 130 0.2891 0.2721 0.2846 0.034 2y8c:B
17 7m7f:A 1390 35 0.0859 0.0079 0.3143 1.9 2fr0:A, 2fr1:A, 7m7i:A
18 3hq2:B 497 26 0.0781 0.0201 0.3846 2.0 3hq2:A
19 3t64:A 153 127 0.2578 0.2157 0.2598 3.1 3t60:A, 3t60:B, 3t60:C, 3t64:B, 3t64:C, 3t6y:A, 3t6y:B, 3t6y:C, 3t70:A, 3t70:B, 3t70:C, 1vyq:A, 1vyq:B, 1vyq:C, 2y8c:A
20 5ggi:B 551 78 0.1484 0.0345 0.2436 3.7 5ggi:A, 5ggj:A, 5ggj:B, 5ggk:A, 5ggk:B, 5ggl:A, 5ggl:B, 5ggn:A, 5ggn:B, 5ggo:A, 5ggo:B, 5ggp:A, 5ggp:B, 5xfc:A, 5xfc:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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